Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C3438_RS11510 Genome accession   NZ_CP026533
Coordinates   2228559..2229512 (+) Length   317 a.a.
NCBI ID   WP_104843085.1    Uniprot ID   -
Organism   Bacillus velezensis strain DKU_NT_04     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2223559..2234512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS11485 (C3438_11485) - 2223605..2225032 (+) 1428 WP_088056326.1 HAMP domain-containing sensor histidine kinase -
  C3438_RS11490 (C3438_11490) rapC 2225191..2226339 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  C3438_RS11495 (C3438_11495) phrC 2226323..2226442 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  C3438_RS11500 (C3438_11500) - 2226592..2226687 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  C3438_RS11505 (C3438_11505) - 2226782..2228146 (-) 1365 WP_104843084.1 aspartate kinase -
  C3438_RS11510 (C3438_11510) ceuB 2228559..2229512 (+) 954 WP_104843085.1 ABC transporter permease Machinery gene
  C3438_RS11515 (C3438_11515) - 2229502..2230449 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  C3438_RS11520 (C3438_11520) - 2230443..2231201 (+) 759 WP_022552588.1 ABC transporter ATP-binding protein -
  C3438_RS11525 (C3438_11525) - 2231223..2232167 (+) 945 WP_021495116.1 siderophore ABC transporter substrate-binding protein -
  C3438_RS11530 (C3438_11530) - 2232209..2233633 (-) 1425 WP_104843086.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34973.29 Da        Isoelectric Point: 9.6741

>NTDB_id=270165 C3438_RS11510 WP_104843085.1 2228559..2229512(+) (ceuB) [Bacillus velezensis strain DKU_NT_04]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRLIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=270165 C3438_RS11510 WP_104843085.1 2228559..2229512(+) (ceuB) [Bacillus velezensis strain DKU_NT_04]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTTGTCAAAGGCAGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCCCACAC
CGCTCTCTTGGGCGCTGTTTTTGTACTGTTTTGCGACATTTTGGGAAGGTTGATCATTTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment