Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C3438_RS04695 Genome accession   NZ_CP026533
Coordinates   900004..900648 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain DKU_NT_04     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 895004..905648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS04660 (C3438_04660) - 896191..896621 (+) 431 Protein_906 Na(+)/H(+) antiporter subunit B -
  C3438_RS04665 (C3438_04665) - 896621..896962 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  C3438_RS04670 (C3438_04670) - 896955..898435 (+) 1481 Protein_908 Na+/H+ antiporter subunit D -
  C3438_RS04675 (C3438_04675) - 898441..898917 (+) 477 WP_070082285.1 Na+/H+ antiporter subunit E -
  C3438_RS04680 (C3438_04680) - 898917..899201 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  C3438_RS04685 (C3438_04685) mnhG 899185..899559 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  C3438_RS04690 (C3438_04690) - 899599..899982 (-) 384 WP_104842774.1 hotdog fold thioesterase -
  C3438_RS04695 (C3438_04695) comA 900004..900648 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  C3438_RS04700 (C3438_04700) comP 900729..903035 (-) 2307 WP_065180455.1 sensor histidine kinase Regulator
  C3438_RS04705 (C3438_04705) comX 903054..903230 (-) 177 WP_017419424.1 competence pheromone ComX -
  C3438_RS04710 (C3438_04710) - 903245..904141 (-) 897 WP_017419425.1 polyprenyl synthetase family protein -
  C3438_RS04715 (C3438_04715) degQ 904272..904412 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  C3438_RS04725 (C3438_04725) - 904877..905218 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=270139 C3438_RS04695 WP_014418762.1 900004..900648(-) (comA) [Bacillus velezensis strain DKU_NT_04]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=270139 C3438_RS04695 WP_014418762.1 900004..900648(-) (comA) [Bacillus velezensis strain DKU_NT_04]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86

Multiple sequence alignment