Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   C3K08_RS08905 Genome accession   NZ_CP026516
Coordinates   1787711..1788088 (-) Length   125 a.a.
NCBI ID   WP_234009030.1    Uniprot ID   -
Organism   Deinococcus sp. NW-56     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1782711..1793088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K08_RS08895 - 1784481..1785467 (+) 987 WP_104990984.1 Gfo/Idh/MocA family protein -
  C3K08_RS08900 comEC 1785474..1787711 (-) 2238 WP_104990985.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C3K08_RS08905 comEA 1787711..1788088 (-) 378 WP_234009030.1 ComEA family DNA-binding protein Machinery gene
  C3K08_RS08910 yedA 1788207..1789106 (+) 900 WP_234009031.1 drug/metabolite exporter YedA -
  C3K08_RS08915 - 1789119..1790207 (-) 1089 WP_104990988.1 methyltransferase domain-containing protein -
  C3K08_RS08920 - 1790285..1791688 (+) 1404 WP_104990989.1 TrkH family potassium uptake protein -
  C3K08_RS08925 - 1791732..1792391 (+) 660 WP_104990990.1 TrkA family potassium uptake protein -
  C3K08_RS08930 - 1792412..1792855 (-) 444 WP_104990991.1 hypothetical protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 12954.14 Da        Isoelectric Point: 9.9678

>NTDB_id=270055 C3K08_RS08905 WP_234009030.1 1787711..1788088(-) (comEA) [Deinococcus sp. NW-56]
MLPTERHWTALLAGGLLAVGALTLGPALRPPVSTPTVTRVALPLPPTPPEAAPEYPTTGSVTPLISGRLNLNTATPEQLE
ALPRIGPALAARIVAGRPYRSLADLDRVKGIGPSTLADLTPLVTF

Nucleotide


Download         Length: 378 bp        

>NTDB_id=270055 C3K08_RS08905 WP_234009030.1 1787711..1788088(-) (comEA) [Deinococcus sp. NW-56]
GTGCTTCCCACCGAACGGCACTGGACAGCCCTGCTCGCGGGCGGCCTGCTGGCCGTGGGGGCGCTGACGCTGGGACCTGC
CTTGCGCCCGCCTGTCAGTACCCCCACCGTGACGCGGGTGGCCCTGCCGCTGCCCCCCACGCCGCCTGAGGCTGCGCCGG
AGTACCCCACCACCGGCAGCGTGACGCCGCTCATCTCCGGCCGCTTGAACCTGAACACGGCCACCCCGGAACAGCTTGAA
GCCCTCCCGCGCATCGGCCCTGCCCTCGCGGCCCGGATCGTGGCCGGGCGGCCCTACCGCTCGCTGGCTGACCTCGACCG
GGTGAAGGGCATCGGCCCCTCGACCCTCGCTGACCTCACGCCCCTCGTCACCTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(68-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.625

100

0.672

Multiple sequence alignment