Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   C3K08_RS08900 Genome accession   NZ_CP026516
Coordinates   1785474..1787711 (-) Length   745 a.a.
NCBI ID   WP_104990985.1    Uniprot ID   -
Organism   Deinococcus sp. NW-56     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1780474..1792711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K08_RS08875 - 1780650..1781162 (-) 513 WP_104991998.1 HDIG domain-containing metalloprotein -
  C3K08_RS08880 trxB 1781194..1782174 (-) 981 WP_104990982.1 thioredoxin-disulfide reductase -
  C3K08_RS08890 - 1782618..1784396 (+) 1779 WP_104990983.1 30S ribosomal protein S1 -
  C3K08_RS08895 - 1784481..1785467 (+) 987 WP_104990984.1 Gfo/Idh/MocA family protein -
  C3K08_RS08900 comEC 1785474..1787711 (-) 2238 WP_104990985.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C3K08_RS08905 comEA 1787711..1788088 (-) 378 WP_234009030.1 ComEA family DNA-binding protein Machinery gene
  C3K08_RS08910 yedA 1788207..1789106 (+) 900 WP_234009031.1 drug/metabolite exporter YedA -
  C3K08_RS08915 - 1789119..1790207 (-) 1089 WP_104990988.1 methyltransferase domain-containing protein -
  C3K08_RS08920 - 1790285..1791688 (+) 1404 WP_104990989.1 TrkH family potassium uptake protein -
  C3K08_RS08925 - 1791732..1792391 (+) 660 WP_104990990.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 77772.81 Da        Isoelectric Point: 9.5990

>NTDB_id=270054 C3K08_RS08900 WP_104990985.1 1785474..1787711(-) (comEC) [Deinococcus sp. NW-56]
MLGRHAASPVASTPATLSGTRASAGRLAWPIPLALGVIGGILLGLGLVWGGLVMLAGVVLAALDRRPLLGLLAVVGLGLG
FGSERLNAAKPDPLTPWVGALVTLRGEWDGQFLRLADPPARVALSPKPTQPPGHLTVSGRLVRPEGRRLPGGFDQAGWLR
GQGGLLVPTPTTVLAAAEVRAHTPEGGWRGWFRRGLTAGLNDRQAALMQAIELGDRGDIGREEFAEGYSVRDAFARSGLS
HLMALSGQNVALLTGVVVWLLIRLRVQVAWRYAVAAALLIPYLMLVGVSPSILRAVLMGFAVLVAFALGRGRPDPYGTVA
LAAVACLLPFPLWLLDVGFQLSFLAVLGLTLSGKLAARLPGRWPMALRLALVATVLAELATLPVIAGTFGQLPLVGLPAN
LVAGVIMAALVPLGFLAGLLGPLGVVLSPLTGLLASALLFVVEVFGKAPVLTWGNVGAGGFVAYGVAALAGVLWLLGRVR
APVALGTALSCALLTSLPGWIRPAHELVFLDVGQGDSTLIRSRGLEVLVDGGGSVGSDYDVGTRTVVPALRALGVRGLDV
VVATHADTDHIEGLSGVLRSLPVGELWIGQRKTDDPVLAELLAVAREEGVPVREVRRGDRVEAGGVRLTVLWPEGRFWSS
EDNDNSVALTVEAGDFRAALLGDLDAWGEARVGVGDLDLLKAAHHGSRHSTGEAVLRESTPADVLVSVGRNTYGHPHPDV
LERIGAAGAKVWRTDQLGTVRWPLP

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=270054 C3K08_RS08900 WP_104990985.1 1785474..1787711(-) (comEC) [Deinococcus sp. NW-56]
ATGCTGGGACGGCACGCCGCTTCTCCTGTTGCCTCAACCCCGGCAACCCTCAGCGGCACACGGGCCTCCGCCGGACGCCT
CGCTTGGCCTATCCCGCTCGCTCTCGGCGTGATCGGCGGCATCCTGCTGGGCTTGGGACTGGTTTGGGGCGGGCTGGTCA
TGCTGGCCGGTGTGGTGCTCGCTGCGCTGGATCGCCGTCCGCTCCTCGGCCTTCTCGCGGTCGTGGGCCTGGGGCTGGGC
TTCGGTTCCGAGCGCCTGAACGCCGCCAAACCGGACCCACTGACCCCCTGGGTGGGTGCCCTCGTCACCCTGCGCGGCGA
GTGGGACGGGCAATTTCTGCGGCTGGCCGATCCCCCGGCGCGGGTGGCCCTGTCGCCCAAACCGACCCAGCCACCGGGCC
ACCTCACCGTGAGTGGCCGTCTGGTGCGCCCCGAGGGGCGGCGCCTTCCGGGCGGGTTCGATCAGGCGGGGTGGCTGCGT
GGGCAGGGTGGGCTGCTGGTCCCCACGCCGACGACGGTGCTCGCCGCCGCCGAGGTCCGCGCCCACACCCCGGAAGGCGG
CTGGCGCGGCTGGTTCCGCCGGGGCCTGACCGCCGGGCTGAACGATCGGCAGGCCGCGCTGATGCAGGCCATCGAGCTGG
GCGACCGGGGCGACATCGGCCGCGAGGAGTTCGCGGAAGGGTATTCGGTGCGCGACGCCTTCGCCCGCTCGGGCCTCTCG
CACCTGATGGCCCTCAGCGGGCAGAACGTGGCCCTGCTGACCGGGGTGGTCGTGTGGCTGCTGATCCGGCTACGGGTGCA
GGTGGCGTGGCGCTACGCGGTGGCCGCCGCGCTGCTCATTCCTTACCTGATGTTGGTGGGCGTCTCGCCCAGCATCCTGC
GGGCGGTGCTGATGGGCTTCGCCGTGCTCGTTGCCTTCGCACTCGGACGCGGCAGACCCGACCCCTACGGCACAGTCGCG
CTCGCGGCGGTGGCCTGCCTGCTGCCCTTTCCGCTGTGGTTGCTGGACGTGGGCTTTCAGCTCTCTTTCCTCGCGGTGCT
GGGGCTGACCCTCTCGGGCAAGCTGGCCGCCCGGCTGCCGGGCCGATGGCCGATGGCCCTGCGCCTCGCCCTCGTCGCCA
CCGTGCTGGCCGAACTCGCCACCCTGCCCGTCATCGCGGGCACCTTCGGGCAACTGCCGCTCGTCGGCCTGCCCGCCAAC
CTTGTGGCGGGGGTGATCATGGCCGCGCTGGTGCCCCTGGGATTTCTAGCGGGGTTGCTGGGACCATTGGGCGTGGTCCT
GAGTCCGCTGACGGGCCTGCTCGCCTCGGCGCTGCTGTTCGTCGTGGAGGTCTTCGGCAAAGCCCCGGTGCTGACCTGGG
GCAACGTGGGTGCGGGAGGCTTCGTGGCTTACGGGGTGGCCGCGCTCGCCGGGGTGCTATGGCTGCTGGGGCGGGTGAGA
GCACCTGTGGCGCTGGGTACTGCGCTGAGTTGTGCTCTCCTGACGTCCCTGCCAGGCTGGATTCGCCCTGCCCACGAACT
CGTCTTTCTGGACGTGGGCCAGGGCGACAGCACCCTGATCCGCTCGCGGGGGCTGGAGGTTCTCGTGGATGGCGGCGGCT
CGGTCGGCTCCGACTACGACGTGGGCACCCGCACGGTCGTTCCCGCGCTGCGGGCGCTGGGGGTGAGGGGACTGGACGTG
GTGGTGGCGACCCACGCGGACACGGATCACATCGAGGGCCTCTCCGGCGTCCTGCGCTCGTTGCCCGTGGGCGAACTGTG
GATCGGCCAGCGCAAGACCGACGATCCTGTGCTGGCCGAGCTTCTCGCTGTCGCACGTGAAGAAGGTGTGCCCGTCCGTG
AGGTCCGCCGGGGCGACCGGGTGGAGGCTGGGGGCGTGCGCCTCACCGTCCTGTGGCCCGAGGGCCGCTTCTGGTCCAGC
GAGGACAACGACAACAGCGTCGCCCTGACCGTCGAGGCGGGCGACTTCCGCGCCGCTCTGCTGGGCGACCTGGATGCCTG
GGGCGAGGCGCGGGTGGGCGTGGGCGACCTCGACCTGCTCAAGGCCGCCCACCACGGCAGCCGTCACAGCACGGGTGAGG
CCGTGCTTCGGGAGAGCACCCCCGCCGACGTGCTGGTCAGCGTGGGGCGCAATACTTACGGGCACCCCCACCCGGATGTG
CTGGAACGAATCGGCGCTGCGGGAGCGAAGGTCTGGCGCACCGATCAACTCGGGACGGTGCGCTGGCCGTTGCCGTGA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(547-679)

Competence protein (Competence)

(230-476)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

69.418

99.195

0.689

Multiple sequence alignment