Detailed information NTG0270052

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: C3K08_RS07075
• Genome accession: NZ_CP026516
• Coordinates: 1413033..1414253 (+)
• Length: 406 a.a.
• NCBI ID: WP_104990665.1
• Uniprot ID: -
• Organism: Deinococcus sp. NW-56
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1408033..1419253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C3K08_RS07050	-	1408082..1409323 (-)	1242	WP_158679866.1	MFS transporter	-
C3K08_RS07055	truB	1409408..1410340 (+)	933	WP_104991971.1	tRNA pseudouridine(55) synthase TruB	-
C3K08_RS07060	gatA	1410342..1411796 (-)	1455	WP_104990662.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	-
C3K08_RS07065	scpB	1411810..1412340 (-)	531	WP_104990663.1	SMC-Scp complex subunit ScpB	-
C3K08_RS07070	-	1412337..1412960 (-)	624	WP_104990664.1	L-threonylcarbamoyladenylate synthase	-
C3K08_RS07075	pilC	1413033..1414253 (+)	1221	WP_104990665.1	type II secretion system F family protein	Machinery gene
C3K08_RS07080	-	1414883..1415677 (+)	795	WP_158679867.1	TnsA-like heteromeric transposase endonuclease subunit	-
C3K08_RS07085	-	1415674..1417743 (+)	2070	WP_104990667.1	DDE-type integrase/transposase/recombinase	-
C3K08_RS07090	-	1417744..1418823 (+)	1080	WP_104990668.1	ATP-binding protein	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44152.13 Da
• Isoelectric Point: 9.6552

>NTDB_id=270052 C3K08_RS07075 WP_104990665.1 1413033..1414253(+) (pilC) [Deinococcus sp. NW-56]
MPVYEYRVRDRSGKVLKSQMEAETERQVRDALRAKNMMIVEIKPPKTGLNADVKIPGLTDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLAILQKQIESKAFQAIVASIRTDVEGGTPLSEAIVKHPKVFNRLYVNLVRAGETSGTLDSILERIAAFQEKE
LALRGKIKSAMTYPVMVLVFALGITYFLLTTIVPQFAGILAQLNAPLPFITRMLMAVSDFLKSSGLLIFVFIAVIVVAYR
YVYKTPKGRHTIDDIKLRLPVFGNLLQKSAIASFARTFGLLISSGVNIIESLEITKGTANNAIVEETIENAKNVVMVGEP
MSASLATSKVFPPMVVSMVSIGEETGALDSMLGKVGDFYDREVDEAVESLTAAIEPLMIVFLGAIVGTIVAGMFLPMFSI
IGQLSQ

Nucleotide

• Length: 1221 bp

>NTDB_id=270052 C3K08_RS07075 WP_104990665.1 1413033..1414253(+) (pilC) [Deinococcus sp. NW-56]
ATGCCGGTCTACGAATACCGCGTCCGGGACCGCTCCGGGAAGGTCCTGAAGTCCCAGATGGAGGCCGAGACCGAGCGGCA
GGTCCGCGACGCCCTGCGGGCCAAGAACATGATGATCGTCGAGATCAAGCCCCCCAAGACGGGCCTGAACGCCGACGTCA
AGATTCCAGGCCTGACTGACCGTCCCCCCGGACTCAAGCAGGTGGCGGTCTTTTCCAAGCAGCTCGCCACACTGATCAAC
GCGGGCGTGCCACTGGTGCAGTCCCTCGCCATCCTCCAAAAGCAGATCGAGAGCAAGGCCTTTCAGGCCATCGTGGCGAG
CATCCGCACCGATGTGGAGGGCGGCACGCCGCTCAGCGAGGCCATCGTCAAGCATCCCAAGGTCTTTAACCGCCTGTACG
TCAACCTCGTGCGGGCGGGCGAGACGAGCGGCACGCTGGACTCCATTCTGGAGCGCATCGCGGCCTTTCAGGAAAAGGAA
CTCGCCCTGCGCGGCAAGATCAAGAGCGCGATGACCTACCCGGTGATGGTGCTGGTCTTCGCGCTGGGCATCACGTACTT
CCTGCTGACGACCATCGTGCCGCAGTTCGCGGGGATTCTCGCGCAGCTCAACGCGCCGCTGCCCTTCATCACCCGGATGC
TGATGGCGGTGTCGGACTTCCTGAAAAGCTCAGGGCTGCTGATCTTTGTCTTTATCGCAGTCATTGTGGTGGCTTACCGC
TACGTCTACAAGACGCCGAAGGGCCGCCATACCATCGACGACATCAAGCTGCGGCTGCCCGTGTTCGGCAACCTGCTGCA
AAAGAGCGCCATCGCGTCTTTCGCCCGCACCTTCGGCCTCTTGATCAGCAGCGGCGTGAACATCATCGAGAGCCTGGAGA
TCACCAAGGGCACCGCGAACAACGCCATCGTGGAAGAGACCATCGAGAACGCCAAGAACGTGGTGATGGTGGGCGAGCCA
ATGAGTGCGAGCCTGGCGACGAGCAAGGTCTTTCCACCCATGGTGGTCAGCATGGTCTCCATCGGCGAGGAGACGGGGGC
GCTCGACTCCATGCTGGGCAAGGTGGGCGACTTCTACGACCGCGAGGTGGACGAGGCCGTCGAGAGCCTGACCGCCGCCA
TCGAGCCGCTGATGATCGTCTTCCTGGGGGCCATCGTGGGGACCATCGTGGCGGGGATGTTTCTCCCGATGTTCTCGATC
ATCGGGCAGCTCAGCCAGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	60.837	100	0.608
pilC	Vibrio cholerae strain A1552	36.118	100	0.362