Detailed information NTG0027002

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VIBHAR_RS14045
• Genome accession: NC_009783
• Coordinates: 3028796..3029659 (-)
• Length: 287 a.a.
• NCBI ID: WP_012128534.1
• Uniprot ID: -
• Organism: Vibrio campbellii ATCC BAA-1116
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3023796..3034659

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VIBHAR_RS14015 (VIBHAR_03004)	tnpB	3023819..3024172 (-)	354	WP_012126950.1	IS66 family insertion sequence element accessory protein TnpB	-
VIBHAR_RS14020 (VIBHAR_03005)	tnpA	3024169..3024480 (-)	312	WP_011999494.1	IS66 family insertion sequence element accessory protein TnpA	-
VIBHAR_RS14025 (VIBHAR_03006)	-	3024775..3026337 (-)	1563	WP_012128530.1	sensor domain-containing diguanylate cyclase	-
VIBHAR_RS14030 (VIBHAR_03007)	-	3026562..3026768 (-)	207	WP_041853483.1	hypothetical protein	-
VIBHAR_RS14035 (VIBHAR_03008)	-	3026838..3027674 (+)	837	WP_012128532.1	alpha/beta fold hydrolase	-
VIBHAR_RS14040 (VIBHAR_03009)	-	3027776..3028669 (-)	894	WP_012128533.1	hypothetical protein	-
VIBHAR_RS14045 (VIBHAR_03010)	rpoS	3028796..3029659 (-)	864	WP_012128534.1	RNA polymerase sigma factor RpoD/SigA	Regulator
VIBHAR_RS28660 (VIBHAR_03011)	-	3029911..3030063 (-)	153	WP_225247065.1	hypothetical protein	-
VIBHAR_RS14050 (VIBHAR_03012)	-	3030293..3031213 (+)	921	WP_012128536.1	IS5 family transposase	-
VIBHAR_RS14055 (VIBHAR_03013)	-	3031431..3031766 (-)	336	WP_009707292.1	Grx4 family monothiol glutaredoxin	-
VIBHAR_RS14060 (VIBHAR_03014)	sodB	3032010..3032594 (+)	585	WP_005536241.1	superoxide dismutase [Fe]	-
VIBHAR_RS14065 (VIBHAR_03015)	-	3032751..3033254 (+)	504	WP_012128538.1	VC2046/SO_2500 family protein	-
VIBHAR_RS14070 (VIBHAR_03016)	-	3033389..3034132 (+)	744	WP_012128539.1	SDR family oxidoreductase	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 33079.02 Da
• Isoelectric Point: 9.3709

>NTDB_id=27002 VIBHAR_RS14045 WP_012128534.1 3028796..3029659(-) (rpoS) [Vibrio campbellii ATCC BAA-1116]
MDSKKIKINNNSSELTAELIYFNDIGKYALLSADDEREYARRAKMGDADARTRMINSNLRLVVNIAKRYKGRGLTFLDLI
SEGNIGLMRAVEKFDPEKGFRFSTYATHWIRQSIERELMNQARTVRLPVHINKELKRYVKATKELSQKTQTITPRDIADH
LEIPVSSVLKHLEFDKSTISLDSYQDKEEAKPLAETMACHRLRCPELELEEDNAFLMLLQWIEELEPDLKLILTRRYGLD
GNTPTSLDTVGTELGYSRERIRHLQMQGIKKLQNLAKNIPVSGKRVA

Nucleotide

• Length: 864 bp

>NTDB_id=27002 VIBHAR_RS14045 WP_012128534.1 3028796..3029659(-) (rpoS) [Vibrio campbellii ATCC BAA-1116]
ATGGATAGCAAAAAGATAAAAATTAATAATAACTCGAGTGAGCTGACTGCAGAGTTAATCTATTTCAATGATATTGGGAA
ATACGCTTTACTTAGTGCCGATGACGAAAGGGAGTATGCTCGACGAGCTAAAATGGGCGACGCTGATGCGCGCACAAGGA
TGATAAATAGCAACCTGCGATTGGTTGTTAACATTGCTAAGCGTTACAAGGGGCGTGGTCTCACATTTCTTGACCTCATA
TCAGAGGGCAATATAGGTCTCATGCGAGCCGTTGAGAAATTTGATCCGGAAAAAGGCTTTCGTTTCTCGACTTATGCCAC
TCACTGGATACGTCAATCGATAGAACGAGAGTTGATGAACCAAGCTCGCACGGTCCGTTTACCGGTACATATAAACAAGG
AGCTTAAACGTTATGTTAAAGCTACCAAGGAACTCTCGCAAAAAACTCAAACCATAACGCCGAGGGATATTGCAGATCAT
CTCGAAATCCCAGTAAGTAGCGTCTTAAAACATTTAGAATTCGATAAGTCGACAATATCACTAGATAGTTATCAGGATAA
AGAAGAAGCTAAACCTTTAGCAGAAACAATGGCGTGCCACAGGCTACGCTGTCCGGAGTTAGAGTTAGAAGAAGACAACG
CTTTCTTGATGTTACTCCAATGGATAGAGGAGCTAGAACCCGATTTGAAATTGATCCTTACTCGTCGGTATGGCTTAGAT
GGTAATACGCCGACTTCTCTGGATACTGTGGGAACTGAGTTAGGCTATAGTCGTGAACGAATTCGTCATCTGCAAATGCA
AGGGATAAAAAAGCTTCAAAATTTAGCGAAGAACATTCCAGTTAGTGGAAAAAGAGTTGCTTAG

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (221-273)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (20-48)

• Sigma-70 region 2 (Sigma70_r2) (54-123)

• Sigma-70 region 3 (Sigma70_r3) (134-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	47.407	94.077	0.446