Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   C3F22_RS02535 Genome accession   NZ_CP026420
Coordinates   509194..513711 (+) Length   1505 a.a.
NCBI ID   WP_104425854.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 504194..518711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS02510 (C3F22_02510) - 504663..505307 (-) 645 WP_034170199.1 hypothetical protein -
  C3F22_RS02515 (C3F22_02515) pilG 505590..505973 (+) 384 WP_004784987.1 twitching motility response regulator PilG Regulator
  C3F22_RS02520 (C3F22_02520) - 505999..506367 (+) 369 WP_004784985.1 response regulator -
  C3F22_RS02525 (C3F22_02525) - 506373..506909 (+) 537 WP_004784984.1 chemotaxis protein CheW -
  C3F22_RS02530 (C3F22_02530) - 506956..509025 (+) 2070 WP_005236998.1 methyl-accepting chemotaxis protein -
  C3F22_RS02535 (C3F22_02535) chpA 509194..513711 (+) 4518 WP_104425854.1 Hpt domain-containing protein Regulator
  C3F22_RS02540 (C3F22_02540) - 513712..514170 (+) 459 WP_034701963.1 hypothetical protein -
  C3F22_RS02545 (C3F22_02545) dapE 514229..515365 (-) 1137 WP_034701961.1 succinyl-diaminopimelate desuccinylase -
  C3F22_RS02550 (C3F22_02550) - 515489..515638 (-) 150 WP_004784975.1 entericidin A/B family lipoprotein -
  C3F22_RS02555 (C3F22_02555) - 515754..516629 (-) 876 WP_104425855.1 DUF1853 family protein -
  C3F22_RS02560 (C3F22_02560) - 516718..517155 (+) 438 WP_034701955.1 YbaN family protein -
  C3F22_RS02565 (C3F22_02565) elsL 517152..517664 (+) 513 WP_034701953.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1505 a.a.        Molecular weight: 168596.43 Da        Isoelectric Point: 4.2927

>NTDB_id=269220 C3F22_RS02535 WP_104425854.1 509194..513711(+) (chpA) [Acinetobacter sp. ACNIH1]
MKEILKNLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELNALFPEWLSDSAHQENLKTIRRHFHTLKGSGRMVGAKSA
GEIAWAVEDTLNRVLSGSIQLTPTIQQYAKAVLNIYQFTLYPKFKQVQELDVDLRPVVLLGQQLQQQMTPEPALEELLQL
ADSLTAEGQITGLELGDSAEDQDIIAAIEISTTEFELEKAETEDAARSDVEETVAIFIEEAEEHLETIAKFLHSENEKVQ
DYNALIRAIHTLRGSSSMAQIEEIFEASSKVEHLFKTLLQDEIASTSKETAVLIQYAEFVSDYLHLLRQGDSSKLAAVYA
NFERVWNDYGFAATEAETVETQGLVTKLVELEIDLLLDAEFEFDKRAKVDYPEYIQALSEQAAELLAHTDNRAALGIHEF
TTDLKSAYDALLEKPVLLNSDYAYELFAQAHQEFIHLFDTLAAGQRVILNDDTQKTLSELAAFVQQDLKIFAEDNVPAEQ
VSEEISIPEAATTASIDFAALSQRIASDRQYIDSAETQRDFDEDLLNIFLEEADELLVGIDEDLNTWSKKQDDTTSLNNL
MRHLHTLKGGANMITASHIGSISHELESIYERIIRQQIAVTPALIQIIRLVQDNVSDRIQSIRDEGIDYPAVEAISILQN
IQALVAGQAVAAPVEASIPVVEFEYAGATTESEETADEAPEEIASKNTSSDLEPTLNLEDKQVELTETETLTEPVEVVAE
ERSEEDELKSIVEETFLEESEEILDNTEKLLNQWFDQRSDRSLLLQLQRAAHSIKGGARMIENEQVASIAYELETTFEQF
AVYHFNSNAYDGLLQKTLAWLRQAIFQRDYSNFEQIQSSLKKIAYVDVTAQLPERLAKTETLVTENSFEFVEGDGTEPPR
MMGEWVDTGNTDTSHEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIA
KHGSDNSRYADFDPLEMDQYSSLNQLSKSLAESASDLVDFKSTLSDKIRETEGLLLQQSRIQAEIQESLMRTRLVPFDRM
LPRLQRIVRQTSTTLNRPAELIVQNSEGELDRNILERLVTPFEHMLRNAIDHGLEDTADRIALNKPEVGSILLNISRQGT
DVIVSFSDDGKGIDAEKIREKALSQGLIKEDQTLDSEELLQFIFHPGFSTAKSVTQISGRGVGLDVVQSEIKSLGGHVSV
SSEVGKGTTFTIRVPTTVAVSDALMVKVGDQQYAVSLAQIDRIVRIAPSTLETYFNSKDDFFKIDGVNYKLRYLSEFVSN
QPIPRLNNVVHSLPVLLIKGNSGQAIALLVDQLVGSRAQIVVKPIGHQFANIGVVTGATILGDGQVCLILDGQNIARQIH
GTQRVKHMQDQRDGSRSGSARRLVMIVDDSVTVRKVTSRLLERQGYDIVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDG
FEVTNLVRHHDIHRDLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLIAEKQGS

Nucleotide


Download         Length: 4518 bp        

>NTDB_id=269220 C3F22_RS02535 WP_104425854.1 509194..513711(+) (chpA) [Acinetobacter sp. ACNIH1]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACAACGCTTCCTGAAGACAGTTATCTTGATCAAGATGCAGAAATTCT
TGAAATTTTTGTCGAGGAAATCGAAGAGATTTTCGTTGAGTTAAATGCTTTATTTCCAGAATGGTTGAGTGATTCGGCTC
ATCAGGAAAACCTGAAAACCATTCGCCGCCATTTTCATACCCTGAAAGGTTCAGGCCGTATGGTGGGGGCTAAATCTGCG
GGTGAAATTGCTTGGGCAGTGGAAGATACCTTAAATCGGGTACTTTCAGGTTCAATCCAGTTAACGCCTACGATTCAACA
GTATGCCAAAGCTGTACTGAATATTTACCAGTTTACTTTATATCCAAAATTCAAACAGGTGCAGGAACTCGATGTTGACC
TGCGTCCAGTCGTGCTTTTAGGTCAGCAATTACAACAACAAATGACACCTGAGCCGGCTTTAGAAGAACTCTTGCAACTG
GCAGACAGTCTGACTGCCGAAGGCCAGATCACAGGTCTTGAGCTAGGTGATTCGGCTGAAGATCAAGATATAATTGCAGC
AATAGAAATAAGCACAACAGAATTTGAGCTTGAAAAAGCCGAAACTGAAGATGCTGCACGCAGTGATGTAGAAGAAACCG
TAGCAATCTTTATCGAGGAAGCCGAAGAGCATCTCGAAACGATTGCCAAGTTCCTGCATAGCGAAAATGAAAAAGTGCAG
GATTATAATGCATTGATTCGTGCTATTCATACTTTGCGCGGCAGTTCGTCCATGGCACAGATCGAAGAAATCTTCGAGGC
TAGCTCTAAAGTAGAACATCTGTTTAAAACACTGCTTCAGGATGAAATTGCATCCACTTCAAAAGAAACTGCTGTATTAA
TTCAGTATGCTGAATTTGTCAGCGACTATCTGCATTTGTTACGTCAGGGTGATAGCAGCAAACTGGCAGCAGTGTATGCG
AATTTTGAGCGTGTCTGGAATGATTATGGCTTCGCAGCCACTGAAGCGGAAACAGTTGAAACCCAAGGTCTGGTAACCAA
GCTGGTTGAACTGGAGATTGACCTGTTACTGGATGCCGAGTTTGAATTCGATAAACGCGCTAAAGTCGATTATCCAGAAT
ATATTCAGGCTTTAAGCGAGCAGGCTGCCGAGCTGCTTGCACATACAGATAACCGTGCCGCACTGGGTATTCATGAGTTT
ACGACAGATTTAAAATCTGCCTATGATGCCTTACTAGAAAAACCGGTACTGCTGAACAGCGATTATGCCTATGAGCTGTT
TGCCCAGGCACATCAGGAATTCATTCATTTATTCGATACCCTGGCAGCAGGCCAGCGTGTCATTTTAAATGATGATACGC
AAAAAACCTTGAGTGAACTTGCTGCATTCGTACAGCAGGATCTGAAAATCTTTGCCGAAGACAATGTCCCTGCTGAGCAA
GTATCAGAAGAAATTTCTATTCCTGAAGCTGCAACCACAGCCAGCATTGACTTTGCTGCTTTAAGTCAGCGTATTGCCTC
TGACCGCCAGTACATCGACAGCGCAGAAACTCAGCGTGATTTCGATGAGGATCTACTGAATATCTTCCTGGAAGAAGCGG
ATGAATTACTGGTAGGTATTGATGAAGATCTGAATACCTGGAGTAAAAAGCAGGATGATACGACTTCACTTAACAATCTG
ATGCGTCATTTGCACACCTTGAAGGGCGGTGCAAACATGATTACCGCTTCTCATATCGGTTCGATTTCGCACGAACTGGA
AAGTATTTATGAGCGAATCATCCGTCAGCAGATTGCAGTAACGCCTGCTCTGATTCAAATCATTCGTCTGGTGCAAGATA
ACGTTTCTGACCGTATCCAGTCGATCCGTGATGAAGGTATCGATTATCCAGCGGTTGAAGCAATTTCGATTCTGCAAAAT
ATTCAGGCATTGGTGGCTGGTCAAGCTGTTGCGGCTCCGGTAGAAGCATCAATTCCTGTTGTCGAGTTTGAATATGCAGG
AGCTACTACTGAATCTGAAGAGACAGCAGATGAAGCACCGGAAGAGATTGCATCAAAAAACACAAGTTCAGATCTAGAAC
CAACTCTAAACTTAGAAGATAAACAAGTTGAGCTTACTGAAACAGAAACTTTGACTGAGCCCGTTGAGGTTGTAGCAGAA
GAACGTTCTGAAGAAGATGAACTGAAGTCGATTGTTGAAGAAACCTTCCTGGAAGAATCAGAAGAGATTCTCGACAATAC
CGAAAAACTGCTGAACCAATGGTTTGATCAACGTAGTGACCGTAGCTTATTGCTTCAATTACAACGTGCTGCCCACAGTA
TCAAGGGTGGTGCGCGCATGATTGAAAACGAACAGGTGGCCAGCATTGCGTATGAACTGGAAACCACATTCGAACAGTTT
GCGGTATATCACTTTAACTCGAATGCTTATGATGGCTTGCTGCAAAAAACACTGGCCTGGTTAAGACAAGCTATCTTCCA
GCGTGACTATAGCAATTTTGAACAGATCCAAAGCAGTCTGAAAAAGATTGCTTATGTGGATGTTACTGCGCAGCTGCCGG
AACGTCTGGCTAAAACAGAAACGCTGGTCACTGAAAATAGCTTCGAGTTTGTCGAAGGTGATGGTACTGAGCCACCACGT
ATGATGGGTGAGTGGGTCGATACCGGTAATACCGATACCAGCCACGAGATGATCCGTATCTCTGCTGATCTGGTTGAGAA
GATGATTGACCTGTCAGGTGAGAATGCGATTAACCGTTCGCGTATCGAGATGGACTTAGGCCAACTTGGCAATACCCTGA
ACGAGATGGAACTGGCAATCAAGCGTCTGGCGGATCAGTTGCGCCGAATGGAAGGTGAGCTGGAATCACAGATTATTGCC
AAACACGGTTCAGACAACTCGCGCTATGCAGACTTTGACCCGCTGGAAATGGACCAATATTCGTCACTGAACCAGTTGTC
CAAGTCGCTTGCGGAATCTGCTTCGGACTTGGTTGACTTCAAGAGCACTCTATCTGACAAGATTCGTGAAACTGAAGGTT
TGTTATTACAACAATCACGGATTCAGGCCGAGATTCAGGAAAGCCTGATGCGTACCCGTCTGGTACCGTTTGATCGGATG
TTGCCACGTTTACAACGTATCGTACGTCAGACGTCTACGACCTTGAACCGTCCGGCAGAACTGATTGTTCAGAATAGTGA
AGGTGAATTAGACCGTAATATTCTGGAGCGTCTGGTAACGCCATTCGAACATATGCTGCGTAATGCGATTGACCATGGTC
TGGAAGATACAGCAGACCGTATTGCCTTGAACAAACCAGAAGTCGGTTCAATCCTGTTGAATATCAGCCGTCAAGGTACA
GATGTTATCGTCTCATTTAGTGATGATGGTAAAGGTATCGATGCTGAGAAGATTCGTGAGAAAGCACTGAGCCAAGGCCT
GATCAAAGAAGATCAGACCCTGGATTCGGAAGAGTTATTGCAATTCATTTTCCACCCGGGCTTCAGTACCGCTAAATCTG
TAACCCAGATTTCAGGTCGTGGTGTCGGACTGGATGTAGTACAAAGCGAGATCAAGTCGCTGGGCGGTCACGTATCTGTC
AGCTCTGAAGTAGGCAAAGGTACAACCTTCACCATTCGCGTACCGACGACTGTAGCAGTCAGTGATGCCTTGATGGTAAA
AGTGGGCGATCAGCAATATGCCGTTTCTCTGGCGCAAATCGACCGTATTGTACGTATTGCACCATCTACTCTGGAAACTT
ACTTCAACAGTAAAGACGATTTCTTCAAGATTGATGGCGTTAATTACAAATTGCGTTACCTGTCTGAATTCGTATCGAAT
CAGCCAATTCCACGTCTGAATAATGTGGTGCATTCATTGCCAGTATTGCTGATAAAAGGCAACAGTGGTCAAGCCATTGC
CTTGTTAGTCGATCAACTTGTCGGTTCACGTGCACAGATCGTGGTGAAACCAATTGGCCACCAATTCGCCAATATTGGTG
TAGTGACCGGTGCGACGATTCTTGGTGATGGTCAGGTCTGTCTGATTCTGGATGGTCAGAATATTGCCCGTCAGATCCAT
GGTACACAGCGTGTGAAACACATGCAGGATCAACGTGATGGTTCACGTTCTGGTAGTGCTCGCCGTCTGGTGATGATCGT
GGATGACTCGGTGACTGTTCGTAAGGTGACCTCGCGTCTGCTTGAGCGTCAGGGCTATGATATTGTCACCGCCAAAGATG
GTGTGGATGCGATTGAGCAGCTTGAAAATGTCCGTCCGGATCTGATGTTGCTGGATATTGAAATGCCGCGTATGGACGGT
TTCGAGGTTACGAACCTGGTTCGTCACCACGATATTCACCGTGACCTGCCAATCATCATGATTACTTCGCGTACCGGTGA
GAAACACCGTGAACGTGCCTTCAGTCTGGGCGTAACCCACTACATGGGTAAACCGTTCCAGGAAGCTGAATTACTGGCGA
ACATTCAACAGTTAATTGCTGAAAAACAGGGGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.487

100

0.611


Multiple sequence alignment