Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C3F22_RS00790 Genome accession   NZ_CP026420
Coordinates   153063..153698 (-) Length   211 a.a.
NCBI ID   WP_004786955.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 148063..158698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS00755 (C3F22_00755) mlaE 148123..148902 (+) 780 WP_004786970.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  C3F22_RS00760 (C3F22_00760) - 148902..149579 (+) 678 WP_004786968.1 outer membrane lipid asymmetry maintenance protein MlaD -
  C3F22_RS00765 (C3F22_00765) - 149598..150233 (+) 636 WP_104425682.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  C3F22_RS00770 (C3F22_00770) - 150246..150536 (+) 291 WP_004786964.1 STAS domain-containing protein -
  C3F22_RS00775 (C3F22_00775) - 150872..151885 (-) 1014 WP_004786961.1 CorA family divalent cation transporter -
  C3F22_RS00780 (C3F22_00780) - 152038..152628 (+) 591 WP_034590268.1 TIGR00730 family Rossman fold protein -
  C3F22_RS00785 (C3F22_00785) - 152657..153061 (+) 405 WP_004786957.1 NUDIX hydrolase -
  C3F22_RS00790 (C3F22_00790) comF 153063..153698 (-) 636 WP_004786955.1 ComF family protein Machinery gene
  C3F22_RS00795 (C3F22_00795) recG 153685..155730 (-) 2046 WP_104425683.1 ATP-dependent DNA helicase RecG -
  C3F22_RS00800 (C3F22_00800) - 155764..156576 (+) 813 WP_104425684.1 NAD(P)H-binding protein -
  C3F22_RS00805 (C3F22_00805) - 156880..157866 (+) 987 WP_004278529.1 IS110 family transposase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24452.63 Da        Isoelectric Point: 9.4183

>NTDB_id=269215 C3F22_RS00790 WP_004786955.1 153063..153698(-) (comF) [Acinetobacter sp. ACNIH1]
MPMFKLLQQGKHWLNRLQPCQLCQTDYQNLHSVCQDCWQQLPWAHQTIQRQEMQFQVACDYAYPMDRLIQLFKYEQKLHL
EALLAGALLTLKFPKVSAVVPMPISTERLVERGYNQSLLLAKHVAKHLQIPVWQPIERLKQHSQKGLSRLERIEDIEAQF
RVTTSSKVRYRKVLIIDDVVTTGSSIRALSQQLEKLGCQQIYAACLAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=269215 C3F22_RS00790 WP_004786955.1 153063..153698(-) (comF) [Acinetobacter sp. ACNIH1]
ATGCCTATGTTTAAGCTGCTTCAACAGGGAAAACACTGGCTGAATCGTTTACAGCCTTGTCAGCTATGCCAGACAGATTA
TCAAAATCTGCATTCTGTCTGTCAGGATTGCTGGCAACAGTTACCTTGGGCACATCAGACTATTCAGCGTCAGGAAATGC
AGTTTCAAGTGGCGTGTGACTACGCCTACCCAATGGATCGCCTGATTCAATTATTTAAATATGAGCAAAAGCTGCATCTG
GAAGCTTTATTGGCGGGTGCATTACTGACCTTAAAATTTCCTAAAGTCAGTGCAGTGGTGCCTATGCCGATTTCAACAGA
ACGGCTAGTTGAACGTGGCTATAATCAATCTCTGTTACTGGCCAAGCATGTTGCCAAACATTTACAAATTCCCGTCTGGC
AGCCCATTGAAAGGCTTAAGCAACATTCACAAAAAGGTTTAAGCCGTCTGGAACGTATCGAAGATATTGAGGCCCAGTTC
AGAGTCACTACCTCTTCAAAAGTTCGTTATCGTAAGGTTTTAATTATTGATGATGTGGTTACGACTGGCAGCTCAATTCG
AGCTTTAAGCCAGCAACTGGAAAAACTGGGCTGTCAGCAGATTTATGCCGCCTGTCTGGCAGGAGCCAAACTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.353

98.104

0.602
  comF Acinetobacter baumannii D1279779

60.87

98.104

0.597

Multiple sequence alignment