Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   C3F34_RS08975 Genome accession   NZ_CP026412
Coordinates   1907828..1908709 (+) Length   293 a.a.
NCBI ID   WP_104441434.1    Uniprot ID   A0A2L0HV80
Organism   Acinetobacter sp. ACNIH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1902828..1913709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS08950 (C3F34_08950) - 1903418..1903786 (-) 369 WP_044739147.1 hypothetical protein -
  C3F34_RS08955 (C3F34_08955) - 1904038..1905102 (-) 1065 WP_104441432.1 sensor domain-containing diguanylate cyclase -
  C3F34_RS08960 (C3F34_08960) - 1905370..1905945 (-) 576 WP_044739148.1 xanthine phosphoribosyltransferase -
  C3F34_RS08965 (C3F34_08965) - 1906035..1906748 (-) 714 WP_016168557.1 DUF3108 domain-containing protein -
  C3F34_RS08970 (C3F34_08970) - 1906915..1907598 (-) 684 WP_104441433.1 hypothetical protein -
  C3F34_RS08975 (C3F34_08975) tonB2 1907828..1908709 (+) 882 WP_104441434.1 energy transducer TonB Machinery gene
  C3F34_RS08980 (C3F34_08980) - 1908706..1909011 (-) 306 WP_104441435.1 antibiotic biosynthesis monooxygenase family protein -
  C3F34_RS08985 (C3F34_08985) ybeY 1909090..1909572 (-) 483 WP_104441436.1 rRNA maturation RNase YbeY -
  C3F34_RS08990 (C3F34_08990) - 1909591..1910667 (-) 1077 WP_016168552.1 PhoH family protein -
  C3F34_RS08995 (C3F34_08995) miaB 1910707..1912164 (-) 1458 WP_044739151.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33569.37 Da        Isoelectric Point: 9.9200

>NTDB_id=269193 C3F34_RS08975 WP_104441434.1 1907828..1908709(+) (tonB2) [Acinetobacter sp. ACNIH2]
MILNKINYTPLLRTWWKDPIFTTAVGFALALHLAVLAIEFAAPTQQDAAVKEIAVTLRPSEQKVEQADFLAQADQKGSGT
FREAHRMSSDMPAPMLEQSAGEKQMETLQKTQQKRELNFEEKVLMTTLSWQKQAEQTRRKKAMDELNSQFQAKAAMVASL
EAQYLQRQQNFSRQQKIKTVDGIQAKQDVTAAYLEKFRQKVEFYGNRYYPDQAKQQRLAGEVRLMVILNRNGGIRAIRLI
ESSGHDLLDEAAKASVRKAAPFTGFERNMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=269193 C3F34_RS08975 WP_104441434.1 1907828..1908709(+) (tonB2) [Acinetobacter sp. ACNIH2]
ATGATCCTGAATAAAATAAATTATACGCCTTTATTGCGCACGTGGTGGAAAGACCCGATTTTTACAACTGCGGTGGGCTT
TGCACTGGCTTTACATCTCGCTGTTTTAGCTATTGAATTTGCTGCACCCACACAACAGGATGCGGCGGTGAAGGAAATTG
CAGTGACGTTGCGACCGAGCGAACAGAAGGTTGAACAAGCTGATTTTCTAGCACAAGCAGATCAGAAAGGTTCAGGAACA
TTCCGCGAAGCACATCGAATGTCGAGTGACATGCCAGCACCCATGCTGGAGCAAAGTGCGGGTGAAAAGCAGATGGAAAC
CCTGCAAAAAACCCAACAAAAGCGTGAACTGAATTTTGAAGAAAAAGTCTTGATGACCACGCTGAGTTGGCAAAAGCAGG
CTGAACAAACTCGTCGGAAAAAAGCGATGGATGAACTAAACAGTCAGTTTCAAGCCAAAGCTGCCATGGTAGCAAGTCTG
GAAGCACAATATTTACAGCGTCAACAGAATTTTAGCCGCCAACAGAAAATTAAAACGGTCGATGGTATTCAAGCCAAGCA
AGACGTTACAGCGGCATATTTAGAAAAATTTAGACAGAAAGTTGAATTTTACGGCAACCGTTATTATCCAGATCAAGCAA
AACAACAGCGGTTGGCAGGTGAAGTTCGTTTGATGGTCATTCTGAACCGTAATGGTGGGATTCGGGCCATTCGTTTAATT
GAAAGCTCTGGACATGACTTACTTGATGAAGCCGCGAAAGCATCGGTACGTAAAGCGGCACCATTTACTGGATTTGAACG
TAATATGAAAGATATCTCCGAGTTACGCATTGTCCGAACATGGCGTTTTGACCCTGCGGAAGCCGAGTTTGAAGTCCATT
AA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0HV80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.5

95.563

0.693

Multiple sequence alignment