Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C3F34_RS08305 Genome accession   NZ_CP026412
Coordinates   1786145..1786588 (+) Length   147 a.a.
NCBI ID   WP_052662086.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1781145..1791588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS08295 (C3F34_08295) - 1781796..1785594 (+) 3799 Protein_1611 PilC/PilY family type IV pilus protein -
  C3F34_RS08300 (C3F34_08300) - 1785582..1786145 (+) 564 WP_044739676.1 type IV pilin protein -
  C3F34_RS08305 (C3F34_08305) comF 1786145..1786588 (+) 444 WP_052662086.1 type IV pilin protein Machinery gene
  C3F34_RS08310 (C3F34_08310) rpsP 1786739..1786996 (+) 258 WP_016168678.1 30S ribosomal protein S16 -
  C3F34_RS08315 (C3F34_08315) rimM 1787022..1787570 (+) 549 WP_044739674.1 ribosome maturation factor RimM -
  C3F34_RS08320 (C3F34_08320) trmD 1787598..1788332 (+) 735 WP_104441396.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  C3F34_RS08325 (C3F34_08325) rplS 1788520..1788894 (+) 375 WP_016168675.1 50S ribosomal protein L19 -
  C3F34_RS08330 (C3F34_08330) - 1788953..1789926 (-) 974 Protein_1618 lipase family alpha/beta hydrolase -
  C3F34_RS08335 (C3F34_08335) - 1790092..1791075 (-) 984 WP_016168673.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15830.95 Da        Isoelectric Point: 8.9546

>NTDB_id=269190 C3F34_RS08305 WP_052662086.1 1786145..1786588(+) (comF) [Acinetobacter sp. ACNIH2]
MKGFTLIELMIVVAIIGILAAIAYPSYTGYKVRVQRADAQTEMLQIARTLASYKLANSNFAGRTLSNVYGSAQTSDGMYD
FTLTDRNNVALTNSSANTNGWLLIATPKSGTVQDGNGVICLNDQGQKYWSKAATTCVLSASSTWEGR

Nucleotide


Download         Length: 444 bp        

>NTDB_id=269190 C3F34_RS08305 WP_052662086.1 1786145..1786588(+) (comF) [Acinetobacter sp. ACNIH2]
ATGAAGGGCTTTACACTTATCGAGTTAATGATTGTTGTAGCAATTATTGGAATTCTTGCGGCAATTGCTTACCCATCTTA
TACAGGTTACAAGGTTCGTGTGCAAAGAGCAGATGCACAAACTGAAATGTTGCAAATTGCCCGTACTTTGGCGAGTTATA
AACTCGCCAACAGTAACTTTGCAGGAAGGACATTATCGAATGTTTATGGTTCAGCTCAAACCTCTGATGGGATGTATGAT
TTCACGCTCACAGATAGAAATAATGTTGCATTAACAAATAGTTCTGCTAATACGAATGGTTGGTTGTTGATTGCTACACC
TAAATCAGGGACAGTTCAAGATGGTAATGGGGTTATCTGTTTAAATGATCAAGGACAAAAATACTGGTCAAAAGCTGCAA
CCACATGTGTGCTGTCAGCTAGTTCAACTTGGGAAGGTCGCTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(25-120)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

54.11

99.32

0.537
  pilE Acinetobacter baumannii D1279779

48.951

97.279

0.476
  comE Acinetobacter baylyi ADP1

32.143

100

0.367

Multiple sequence alignment