Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   C3F34_RS08285 Genome accession   NZ_CP026412
Coordinates   1779912..1780898 (+) Length   328 a.a.
NCBI ID   WP_016168683.1    Uniprot ID   R9AJP8
Organism   Acinetobacter sp. ACNIH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1774912..1785898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS08260 (C3F34_08260) rpoZ 1776635..1776916 (-) 282 WP_004978050.1 DNA-directed RNA polymerase subunit omega -
  C3F34_RS08265 (C3F34_08265) gmk 1776996..1777619 (-) 624 WP_016168687.1 guanylate kinase -
  C3F34_RS08270 (C3F34_08270) ispH 1777755..1778705 (+) 951 WP_104441392.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C3F34_RS08275 (C3F34_08275) - 1778871..1779368 (+) 498 WP_104441393.1 GspH/FimT family pseudopilin -
  C3F34_RS08280 (C3F34_08280) pilV 1779368..1779910 (+) 543 WP_104441394.1 type IV pilus modification protein PilV Machinery gene
  C3F34_RS08285 (C3F34_08285) pilW 1779912..1780898 (+) 987 WP_016168683.1 PilW family protein Machinery gene
  C3F34_RS08290 (C3F34_08290) - 1780895..1781722 (+) 828 WP_016168682.1 pilus assembly PilX family protein -
  C3F34_RS08295 (C3F34_08295) - 1781796..1785594 (+) 3799 Protein_1611 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 35289.95 Da        Isoelectric Point: 7.1326

>NTDB_id=269189 C3F34_RS08285 WP_016168683.1 1779912..1780898(+) (pilW) [Acinetobacter sp. ACNIH2]
MNNNYVSMTKQQGFTLVELMVALVLGLLISAAAIQLFTGGLLSSRMQEASAELQNSGVFGLDYIAKDIRLANYANTTNPE
LNEQTSWGGVVLTARTATVTTANIPIPASTPFVSNGLLSHSQGDTLSTVTNEWRGLSNVNLTSDQLTIQFISPNAMINCE
GANVQAGDYVIQRYFVRRDPATATSGTDYGLACDANQPTAAGTTPVLPPTTINGFGDAGEIIIPRVDHFTVQLGVRNSLG
NLAYYTINQYRTLATTERAAARIPPRIISVKLGVLVRSMDNTNNSAIDLTKQIPILNQNVTLNNTTTKFARRVYTTNITL
RNGLGEAL

Nucleotide


Download         Length: 987 bp        

>NTDB_id=269189 C3F34_RS08285 WP_016168683.1 1779912..1780898(+) (pilW) [Acinetobacter sp. ACNIH2]
ATGAATAACAACTATGTTTCTATGACAAAACAACAAGGTTTTACCTTAGTTGAATTGATGGTAGCCCTAGTTTTGGGGTT
ATTGATCAGTGCTGCTGCAATTCAATTATTTACTGGGGGATTGCTGTCCTCTCGCATGCAAGAGGCAAGTGCAGAGTTAC
AAAATAGTGGTGTATTTGGTTTGGATTATATTGCCAAAGACATTCGTTTAGCCAATTATGCTAACACGACCAATCCTGAA
CTAAATGAACAAACCTCATGGGGTGGGGTAGTCCTGACTGCAAGAACGGCTACAGTCACAACAGCGAATATTCCTATTCC
AGCTTCTACTCCATTTGTTTCAAATGGCTTATTAAGCCACAGTCAAGGCGACACCTTAAGTACTGTAACAAATGAATGGC
GTGGACTTTCGAATGTTAACCTTACTAGCGACCAGTTGACCATCCAATTCATTTCTCCAAATGCGATGATAAATTGCGAA
GGAGCAAATGTTCAAGCCGGTGACTATGTTATACAACGATATTTTGTTAGACGAGATCCTGCAACTGCTACCTCTGGTAC
AGACTATGGACTAGCTTGTGATGCAAATCAACCAACTGCTGCTGGAACAACGCCAGTTTTGCCACCCACAACAATTAATG
GTTTTGGTGACGCGGGAGAAATTATTATTCCACGTGTAGATCATTTTACAGTGCAATTAGGCGTAAGAAATAGTTTGGGG
AACTTGGCATATTACACAATTAATCAATATCGGACACTTGCAACAACTGAACGTGCAGCAGCTAGAATTCCACCACGTAT
TATCTCTGTAAAACTTGGGGTCTTGGTGCGATCAATGGACAATACTAATAATTCGGCTATTGATTTAACGAAGCAAATTC
CAATTTTGAATCAAAACGTTACGTTAAATAATACAACCACAAAATTTGCTCGTCGTGTATATACCACCAATATTACATTG
CGCAATGGTTTAGGAGAAGCACTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(198-322)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R9AJP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

52.353

100

0.543
  comB Acinetobacter baylyi ADP1

34.795

100

0.363

Multiple sequence alignment