Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BV11031_RS16660 Genome accession   NZ_CP026362
Coordinates   3163683..3164132 (+) Length   149 a.a.
NCBI ID   WP_128568242.1    Uniprot ID   -
Organism   Bacillus vallismortis strain DSM 11031     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3158683..3169132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS16640 (BV11031_16615) hxlR 3159887..3160249 (-) 363 WP_010330235.1 transcriptional activator HxlR -
  BV11031_RS16645 (BV11031_16620) hxlA 3160479..3161111 (+) 633 WP_010330234.1 3-hexulose-6-phosphate synthase -
  BV11031_RS16650 (BV11031_16625) hxlB 3161116..3161673 (+) 558 WP_010330233.1 6-phospho-3-hexuloisomerase -
  BV11031_RS16655 (BV11031_16630) tlpC 3161785..3163506 (+) 1722 WP_010330232.1 methyl-accepting chemotaxis protein TlpC -
  BV11031_RS16660 (BV11031_16635) nucA/comI 3163683..3164132 (+) 450 WP_128568242.1 DNA-entry nuclease Machinery gene
  BV11031_RS16665 (BV11031_16640) nin/comJ 3164156..3164554 (+) 399 WP_010330230.1 DNA-entry nuclease inhibitor Regulator
  BV11031_RS23040 - 3164591..3164694 (-) 104 Protein_3257 hypothetical protein -
  BV11031_RS16670 (BV11031_16645) - 3164832..3165560 (-) 729 WP_010330229.1 AAA family ATPase -
  BV11031_RS16675 (BV11031_16650) - 3165572..3165913 (-) 342 WP_010330228.1 DUF3147 family protein -
  BV11031_RS16680 (BV11031_16655) - 3165901..3166323 (-) 423 WP_010330227.1 MarR family transcriptional regulator -
  BV11031_RS16685 (BV11031_16660) - 3166459..3166791 (-) 333 WP_010330226.1 YckD family protein -
  BV11031_RS16690 (BV11031_16665) - 3166874..3167329 (-) 456 WP_010330225.1 RDD family protein -
  BV11031_RS16695 (BV11031_16670) - 3167342..3168478 (-) 1137 WP_010330224.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16432.34 Da        Isoelectric Point: 4.2345

>NTDB_id=268852 BV11031_RS16660 WP_128568242.1 3163683..3164132(+) (nucA/comI) [Bacillus vallismortis strain DSM 11031]
MNITMDIIKTILLVIVVIAAAAVGLIKGDFFSADQKTSQTNEYDETIALPSDRYPETAKHIEDAINEGYSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIR

Nucleotide


Download         Length: 450 bp        

>NTDB_id=268852 BV11031_RS16660 WP_128568242.1 3163683..3164132(+) (nucA/comI) [Bacillus vallismortis strain DSM 11031]
GTGAACATCACGATGGACATCATAAAAACGATACTTCTCGTCATCGTCGTCATAGCAGCTGCAGCTGTCGGCCTGATCAA
GGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAATGAATATGACGAAACAATCGCCCTCCCTTCGGACCGTT
ATCCCGAAACAGCAAAACATATTGAGGATGCGATAAATGAGGGGTACTCAGATGTATGCACCATCGACAGAGACGGCGCT
GAGGAACGCCGCGAGCAATCATTAAAAGACGTACCTCCTAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCAGTAGAATATATTTCTCCCGCAGACAACCGCGGTGCAGGCTCCTGGGTCGGGCATC
AGCTTACCGATTATCCAGACGGCACAAAGGTTTTATTCACCATTCGGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

91.946

100

0.919

Multiple sequence alignment