Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | Aba810CP_RS20435 | Genome accession | NZ_CP026338 |
| Coordinates | 3740636..3741496 (+) | Length | 286 a.a. |
| NCBI ID | WP_001152284.1 | Uniprot ID | A0A3R9CN06 |
| Organism | Acinetobacter baumannii strain 810CP | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3735636..3746496
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Aba810CP_RS18240 (Aba810CP_18235) | secG | 3736241..3736570 (-) | 330 | WP_000555570.1 | preprotein translocase subunit SecG | - |
| Aba810CP_RS18245 (Aba810CP_18240) | tpiA | 3736583..3737377 (-) | 795 | WP_000016939.1 | triose-phosphate isomerase | - |
| Aba810CP_RS18250 (Aba810CP_18245) | pilB | 3737668..3739380 (+) | 1713 | WP_001274984.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| Aba810CP_RS18255 (Aba810CP_18250) | pilC | 3739410..3740636 (+) | 1227 | WP_000279218.1 | type II secretion system F family protein | Machinery gene |
| Aba810CP_RS20435 (Aba810CP_18255) | pilD | 3740636..3741496 (+) | 861 | WP_001152284.1 | prepilin peptidase | Machinery gene |
| Aba810CP_RS18265 (Aba810CP_18260) | coaE | 3741498..3742094 (+) | 597 | WP_000874127.1 | dephospho-CoA kinase | - |
| Aba810CP_RS18270 (Aba810CP_18265) | - | 3742091..3743005 (-) | 915 | WP_000075011.1 | DMT family transporter | - |
| Aba810CP_RS18275 (Aba810CP_18270) | rlmB | 3743041..3743790 (-) | 750 | WP_001118149.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| Aba810CP_RS18280 (Aba810CP_18275) | - | 3743892..3744218 (-) | 327 | WP_000099685.1 | pyrimidine/purine nucleoside phosphorylase | - |
| Aba810CP_RS18285 (Aba810CP_18280) | - | 3744295..3745566 (-) | 1272 | WP_000610365.1 | tetratricopeptide repeat protein | - |
Sequence
Protein
Download Length: 286 a.a. Molecular weight: 32189.64 Da Isoelectric Point: 7.5058
>NTDB_id=268352 Aba810CP_RS20435 WP_001152284.1 3740636..3741496(+) (pilD) [Acinetobacter baumannii strain 810CP]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQR
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVIMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQR
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVIMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG
Nucleotide
Download Length: 861 bp
>NTDB_id=268352 Aba810CP_RS20435 WP_001152284.1 3740636..3741496(+) (pilD) [Acinetobacter baumannii strain 810CP]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCTATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACGG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATCCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCATCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCTATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACGG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATCCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCATCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Acinetobacter nosocomialis M2 |
98.252 |
100 |
0.983 |
| pilD | Acinetobacter baumannii D1279779 |
97.902 |
100 |
0.979 |
| pilD | Vibrio cholerae strain A1552 |
53.309 |
95.105 |
0.507 |
| pilD | Vibrio campbellii strain DS40M4 |
52.555 |
95.804 |
0.503 |
| pilD | Neisseria gonorrhoeae MS11 |
47.348 |
92.308 |
0.437 |