Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   Aba810CP_RS01745 Genome accession   NZ_CP026338
Coordinates   367064..367882 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 810CP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 362064..372882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba810CP_RS01710 (Aba810CP_01710) - 362646..362776 (-) 131 Protein_324 hypothetical protein -
  Aba810CP_RS01715 (Aba810CP_01715) rpoZ 362815..363093 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  Aba810CP_RS01720 (Aba810CP_01720) gmk 363166..363795 (-) 630 WP_000015937.1 guanylate kinase -
  Aba810CP_RS01725 (Aba810CP_01725) ispH 363918..364868 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Aba810CP_RS01730 (Aba810CP_01730) fimU 365038..365511 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Aba810CP_RS01735 (Aba810CP_01735) pilV 365505..366065 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  Aba810CP_RS01740 (Aba810CP_01740) pilW 366066..367067 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  Aba810CP_RS01745 (Aba810CP_01745) pilX 367064..367882 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Aba810CP_RS01750 (Aba810CP_01750) pilY1 367894..371748 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  Aba810CP_RS01755 (Aba810CP_01755) pilY2 371761..372243 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  Aba810CP_RS01760 (Aba810CP_01760) pilE 372240..372665 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=268315 Aba810CP_RS01745 WP_000149374.1 367064..367882(+) (pilX) [Acinetobacter baumannii strain 810CP]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=268315 Aba810CP_RS01745 WP_000149374.1 367064..367882(+) (pilX) [Acinetobacter baumannii strain 810CP]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment