Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | C2841_RS07660 | Genome accession | NZ_CP026325 |
| Coordinates | 1552049..1552624 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203580.1 | Uniprot ID | A0AAC8SBK6 |
| Organism | Helicobacter pylori strain dRdM1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1547049..1557624
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2841_RS07650 (C2841_07670) | - | 1548721..1549931 (-) | 1211 | Protein_1449 | restriction endonuclease subunit S | - |
| C2841_RS07655 (C2841_07675) | - | 1549979..1552018 (-) | 2040 | WP_001045361.1 | VRR-NUC domain-containing protein | - |
| C2841_RS07660 (C2841_07680) | comFC | 1552049..1552624 (-) | 576 | WP_001203580.1 | ComF family protein | Machinery gene |
| C2841_RS07665 (C2841_07685) | tmk | 1552612..1553187 (-) | 576 | WP_000289698.1 | dTMP kinase | - |
| C2841_RS07670 (C2841_07690) | coaD | 1553189..1553662 (-) | 474 | WP_001169234.1 | pantetheine-phosphate adenylyltransferase | - |
| C2841_RS07675 (C2841_07695) | - | 1553662..1554225 (-) | 564 | WP_000780126.1 | UbiX family flavin prenyltransferase | - |
| C2841_RS07680 (C2841_07700) | flgA | 1554235..1554891 (-) | 657 | WP_000697639.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| C2841_RS07685 (C2841_07705) | uvrD | 1554888..1556936 (-) | 2049 | WP_000968580.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21331.91 Da Isoelectric Point: 8.8889
>NTDB_id=268197 C2841_RS07660 WP_001203580.1 1552049..1552624(-) (comFC) [Helicobacter pylori strain dRdM1]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=268197 C2841_RS07660 WP_001203580.1 1552049..1552624(-) (comFC) [Helicobacter pylori strain dRdM1]
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATAAAAGTACACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATAAAAGTACACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
100 |
100 |
1 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |