Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | C2841_RS00230 | Genome accession | NZ_CP026325 |
| Coordinates | 39381..40517 (+) | Length | 378 a.a. |
| NCBI ID | WP_001045839.1 | Uniprot ID | A0AAC8MZ88 |
| Organism | Helicobacter pylori strain dRdM1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34381..45517
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2841_RS00195 (C2841_00195) | panD | 34831..35184 (+) | 354 | WP_000142250.1 | aspartate 1-decarboxylase | - |
| C2841_RS00200 (C2841_00200) | - | 35187..35480 (+) | 294 | WP_000347915.1 | YbaB/EbfC family nucleoid-associated protein | - |
| C2841_RS00205 (C2841_00205) | - | 35480..36484 (+) | 1005 | WP_000468475.1 | PDZ domain-containing protein | - |
| C2841_RS00210 (C2841_00210) | comB6 | 36492..37547 (+) | 1056 | WP_000786660.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| C2841_RS08345 (C2841_00215) | - | 37563..37677 (+) | 115 | Protein_33 | comB7 lipoprotein | - |
| C2841_RS00220 (C2841_00220) | comB8 | 37674..38411 (+) | 738 | WP_000660509.1 | type IV secretion system protein | Machinery gene |
| C2841_RS00225 (C2841_00225) | comB9 | 38411..39388 (+) | 978 | WP_001862530.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| C2841_RS00230 (C2841_00230) | comB10 | 39381..40517 (+) | 1137 | WP_001045839.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| C2841_RS00235 (C2841_00235) | - | 40587..41999 (+) | 1413 | WP_000694809.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| C2841_RS00240 (C2841_00240) | gmd | 42041..43186 (+) | 1146 | WP_000659810.1 | GDP-mannose 4,6-dehydratase | - |
| C2841_RS00245 (C2841_00245) | - | 43179..44111 (+) | 933 | WP_001002442.1 | GDP-L-fucose synthase family protein | - |
| C2841_RS08590 | - | 44139..44355 (-) | 217 | Protein_40 | anthranilate synthase component I | - |
| C2841_RS08350 | - | 44511..44827 (-) | 317 | Protein_41 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42206.80 Da Isoelectric Point: 9.9924
>NTDB_id=268183 C2841_RS00230 WP_001045839.1 39381..40517(+) (comB10) [Helicobacter pylori strain dRdM1]
MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKNPPIDLKANTNPPKKDFSSKQWDLLAARITPFKQGPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKNPPIDLKANTNPPKKDFSSKQWDLLAARITPFKQGPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=268183 C2841_RS00230 WP_001045839.1 39381..40517(+) (comB10) [Helicobacter pylori strain dRdM1]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCTAAAGAAGAAACTTTTAAGAACCCTCCCATAGATTTAAAAGC
AAACACAAACCCCCCTAAAAAAGACTTTTCTTCAAAGCAATGGGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAG
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAATAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCCTTTCTCATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAGGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCCTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCTAAAGAAGAAACTTTTAAGAACCCTCCCATAGATTTAAAAGC
AAACACAAACCCCCCTAAAAAAGACTTTTCTTCAAAGCAATGGGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAG
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAATAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCCTTTCTCATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAGGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCCTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.296 |
100 |
0.963 |