Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | C2841_RS00210 | Genome accession | NZ_CP026325 |
| Coordinates | 36492..37547 (+) | Length | 351 a.a. |
| NCBI ID | WP_000786660.1 | Uniprot ID | A0AAC8N065 |
| Organism | Helicobacter pylori strain dRdM1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 31492..42547
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2841_RS00180 (C2841_00180) | - | 31897..32310 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| C2841_RS00185 (C2841_00185) | - | 32341..32616 (+) | 276 | WP_000784920.1 | ATP-dependent Clp protease adaptor ClpS | - |
| C2841_RS00190 (C2841_00190) | - | 32616..34841 (+) | 2226 | WP_103433659.1 | AAA family ATPase | - |
| C2841_RS00195 (C2841_00195) | panD | 34831..35184 (+) | 354 | WP_000142250.1 | aspartate 1-decarboxylase | - |
| C2841_RS00200 (C2841_00200) | - | 35187..35480 (+) | 294 | WP_000347915.1 | YbaB/EbfC family nucleoid-associated protein | - |
| C2841_RS00205 (C2841_00205) | - | 35480..36484 (+) | 1005 | WP_000468475.1 | PDZ domain-containing protein | - |
| C2841_RS00210 (C2841_00210) | comB6 | 36492..37547 (+) | 1056 | WP_000786660.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| C2841_RS08345 (C2841_00215) | - | 37563..37677 (+) | 115 | Protein_33 | comB7 lipoprotein | - |
| C2841_RS00220 (C2841_00220) | comB8 | 37674..38411 (+) | 738 | WP_000660509.1 | type IV secretion system protein | Machinery gene |
| C2841_RS00225 (C2841_00225) | comB9 | 38411..39388 (+) | 978 | WP_001862530.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| C2841_RS00230 (C2841_00230) | comB10 | 39381..40517 (+) | 1137 | WP_001045839.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| C2841_RS00235 (C2841_00235) | - | 40587..41999 (+) | 1413 | WP_000694809.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39785.73 Da Isoelectric Point: 8.3278
>NTDB_id=268180 C2841_RS00210 WP_000786660.1 36492..37547(+) (comB6) [Helicobacter pylori strain dRdM1]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSDHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSVLQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSDHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSVLQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=268180 C2841_RS00210 WP_000786660.1 36492..37547(+) (comB6) [Helicobacter pylori strain dRdM1]
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTCAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTGACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAGTGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TAGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGTGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGTGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTCAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTGACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAGTGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TAGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGTGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGTGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
100 |
100 |
1 |