Detailed information
Bioinformatically predicted
Overview
| Name | comB9 | Type | Machinery gene |
| Locus tag | C2842_RS00225 | Genome accession | NZ_CP026324 |
| Coordinates | 38404..39381 (+) | Length | 325 a.a. |
| NCBI ID | WP_001862530.1 | Uniprot ID | A0AAC8MZ36 |
| Organism | Helicobacter pylori strain 26695-dRdM2 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 33404..44381
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2842_RS00195 (C2842_00195) | panD | 34824..35177 (+) | 354 | WP_000142250.1 | aspartate 1-decarboxylase | - |
| C2842_RS00200 (C2842_00200) | - | 35180..35473 (+) | 294 | WP_000347915.1 | YbaB/EbfC family nucleoid-associated protein | - |
| C2842_RS00205 (C2842_00205) | - | 35473..36477 (+) | 1005 | WP_000468475.1 | PDZ domain-containing protein | - |
| C2842_RS00210 (C2842_00210) | comB6 | 36485..37540 (+) | 1056 | WP_000786660.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| C2842_RS08335 (C2842_00215) | - | 37556..37670 (+) | 115 | Protein_33 | comB7 lipoprotein | - |
| C2842_RS00220 (C2842_00220) | comB8 | 37667..38404 (+) | 738 | WP_000660509.1 | type IV secretion system protein | Machinery gene |
| C2842_RS00225 (C2842_00225) | comB9 | 38404..39381 (+) | 978 | WP_001862530.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| C2842_RS00230 (C2842_00230) | comB10 | 39374..40510 (+) | 1137 | WP_001045839.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| C2842_RS00235 (C2842_00235) | - | 40580..41992 (+) | 1413 | WP_000694809.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| C2842_RS00240 (C2842_00240) | gmd | 42034..43179 (+) | 1146 | WP_000659810.1 | GDP-mannose 4,6-dehydratase | - |
| C2842_RS00245 (C2842_00245) | - | 43172..44104 (+) | 933 | WP_001002442.1 | GDP-L-fucose synthase family protein | - |
| C2842_RS08590 | - | 44132..44348 (-) | 217 | Protein_40 | anthranilate synthase component I | - |
Sequence
Protein
Download Length: 325 a.a. Molecular weight: 37362.07 Da Isoelectric Point: 9.5485
>NTDB_id=268161 C2842_RS00225 WP_001862530.1 38404..39381(+) (comB9) [Helicobacter pylori strain 26695-dRdM2]
MRKVLYALVGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENMAENAPKDAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGIC
SKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVK
KAKDE
MRKVLYALVGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENMAENAPKDAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGIC
SKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVK
KAKDE
Nucleotide
Download Length: 978 bp
>NTDB_id=268161 C2842_RS00225 WP_001862530.1 38404..39381(+) (comB9) [Helicobacter pylori strain 26695-dRdM2]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCTATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
CAACGATCGTATTTTGCTTATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTTATAGAAGATAAAAAT
TATTATTCTAACGCTTTTTTGAAGCCCCAAAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCACAAACAACAA
ACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACTAATGCCATGA
AAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGT
TCTAAAAAGTCCAAACTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAG
ATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCG
ATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGCATCCGTTTTGTCAAA
AAGGCTAAAGATGAATAA
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCTATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
CAACGATCGTATTTTGCTTATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTTATAGAAGATAAAAAT
TATTATTCTAACGCTTTTTTGAAGCCCCAAAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCACAAACAACAA
ACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACTAATGCCATGA
AAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGT
TCTAAAAAGTCCAAACTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAG
ATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCG
ATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGCATCCGTTTTGTCAAA
AAGGCTAAAGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB9 | Helicobacter pylori P1 |
96.012 |
100 |
0.963 |