Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   C1N50_RS21500 Genome accession   NZ_CP026322
Coordinates   1060148..1061449 (+) Length   433 a.a.
NCBI ID   WP_265093577.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-53     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1055148..1066449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N50_RS21490 (C1N50_21480) - 1057608..1058594 (+) 987 WP_103414331.1 peptidoglycan DD-metalloendopeptidase family protein -
  C1N50_RS21495 (C1N50_21485) ylqF 1058915..1059859 (+) 945 WP_005426767.1 ribosome biogenesis GTPase YlqF -
  C1N50_RS21500 (C1N50_21490) cqsA 1060148..1061449 (+) 1302 WP_265093577.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  C1N50_RS21505 (C1N50_21495) cqsS 1061556..1063601 (-) 2046 WP_103414785.1 response regulator Regulator
  C1N50_RS21510 (C1N50_21500) - 1063906..1064523 (+) 618 WP_038891692.1 HAD family phosphatase -
  C1N50_RS21515 (C1N50_21505) - 1064863..1065411 (-) 549 WP_005426812.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48867.71 Da        Isoelectric Point: 6.2974

>NTDB_id=268151 C1N50_RS21500 WP_265093577.1 1060148..1061449(+) (cqsA) [Vibrio campbellii strain BoB-53]
MRSLQAHANLCNLTNDTELILVKLYNCQRWRFPVLRRELIMSDNPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKR
PQQGAVVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMSAIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMNHLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAKTFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRL
EKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQIVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNI
IRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=268151 C1N50_RS21500 WP_265093577.1 1060148..1061449(+) (cqsA) [Vibrio campbellii strain BoB-53]
ATGCGGAGTTTGCAGGCGCACGCAAACTTATGCAACTTGACTAATGACACCGAGCTCATATTGGTCAAACTATATAACTG
TCAGCGCTGGCGTTTTCCTGTGTTACGAAGAGAACTTATTATGAGTGATAATCCGAAAACAAAACCACTTCCTTCCTTTG
TTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGAGCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGA
CCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACTTGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCG
TGATGCTATCTACGAGCACGATGATAACGTTGTCATGTCTGCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTG
AAACGCAGCTCGCGGATTATGTCGGTATGGGCAGTTGCCTATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTA
CAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGATTTCTTTGCACACATGTCTTTGTGGGAAGGGATTCGAGCGGC
AGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAACCATTTGCGCAAGCAGATACAGCGTCACGGCTCTGGCGTTA
TCGTTGTGGATTCAGTCTATAGCACGATAGGTACGATCGCCCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACCCATGGGCCAAATGGTTCTGGCTTGGTGAAAGCATTGGAACT
CACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAAACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAA
AGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCATCTTTAGTTCGACGGTCCTTCCACAAGAGATCGTTCGACTT
GAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGCGAACCATGCTGTTCAATCGCGCTAAGGAGCTCAGAACAGG
CCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCGCAAATTGTGGCGTTAGAGTGCGGTAGTGAGCGAAATACGGAAC
GAGTGCGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGCTGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATT
ATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACATTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCA
CCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(87-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

89.376

0.515

Multiple sequence alignment