Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   C1N50_RS03135 Genome accession   NZ_CP026321
Coordinates   616315..616932 (-) Length   205 a.a.
NCBI ID   WP_045369814.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-53     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 611315..621932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N50_RS03120 (C1N50_03120) aceF 612311..614209 (+) 1899 WP_077200210.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  C1N50_RS03125 (C1N50_03125) lpdA 614453..615883 (+) 1431 WP_103412704.1 dihydrolipoyl dehydrogenase -
  C1N50_RS03135 (C1N50_03135) opaR 616315..616932 (-) 618 WP_045369814.1 transcriptional regulator OpaR Regulator
  C1N50_RS03140 (C1N50_03140) hpt 617254..617784 (+) 531 WP_005428667.1 hypoxanthine phosphoribosyltransferase -
  C1N50_RS03145 (C1N50_03145) can 617871..618539 (-) 669 WP_005531727.1 carbonate dehydratase -
  C1N50_RS03150 (C1N50_03150) - 618823..620493 (+) 1671 WP_038891985.1 SulP family inorganic anion transporter -
  C1N50_RS03155 (C1N50_03155) - 620734..621651 (+) 918 WP_005531730.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23723.99 Da        Isoelectric Point: 6.2206

>NTDB_id=268128 C1N50_RS03135 WP_045369814.1 616315..616932(-) (opaR) [Vibrio campbellii strain BoB-53]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNRDHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=268128 C1N50_RS03135 WP_045369814.1 616315..616932(-) (opaR) [Vibrio campbellii strain BoB-53]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCGGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCAGTTCTCTAACTTCTTGTCG
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTGTTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCGATCGAGCGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTATTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAGCGAAGCTGAGTTAAC
GAACCTAGTAAGTGCATACTTAGATATGCTATGCATCTACAACCGTGACCATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

99.512

0.951
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment