Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | C1N50_RS01720 | Genome accession | NZ_CP026321 |
| Coordinates | 345346..345921 (+) | Length | 191 a.a. |
| NCBI ID | WP_038889584.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain BoB-53 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 340346..350921
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1N50_RS01705 (C1N50_01705) | oxyR | 340614..341522 (+) | 909 | WP_005432705.1 | DNA-binding transcriptional regulator OxyR | - |
| C1N50_RS01710 (C1N50_01710) | - | 341600..344167 (-) | 2568 | WP_038889585.1 | penicillin-binding protein 1A | - |
| C1N50_RS01715 (C1N50_01715) | pilM | 344346..345362 (+) | 1017 | WP_103412635.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| C1N50_RS01720 (C1N50_01720) | pilN | 345346..345921 (+) | 576 | WP_038889584.1 | PilN domain-containing protein | Machinery gene |
| C1N50_RS01725 (C1N50_01725) | pilO | 345914..346507 (+) | 594 | WP_005432718.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| C1N50_RS01730 (C1N50_01730) | pilP | 346497..347012 (+) | 516 | WP_005432702.1 | pilus assembly protein PilP | Machinery gene |
| C1N50_RS01735 (C1N50_01735) | pilQ | 347047..348789 (+) | 1743 | WP_050906101.1 | type IV pilus secretin PilQ | Machinery gene |
| C1N50_RS01740 (C1N50_01740) | aroK | 348978..349496 (+) | 519 | WP_010443904.1 | shikimate kinase AroK | - |
| C1N50_RS01745 (C1N50_01745) | aroB | 349528..350628 (+) | 1101 | WP_045380637.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22208.55 Da Isoelectric Point: 9.4267
>NTDB_id=268112 C1N50_RS01720 WP_038889584.1 345346..345921(+) (pilN) [Vibrio campbellii strain BoB-53]
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGIGKYYQYQQEQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGIGKYYQYQQEQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG
Nucleotide
Download Length: 576 bp
>NTDB_id=268112 C1N50_RS01720 WP_038889584.1 345346..345921(+) (pilN) [Vibrio campbellii strain BoB-53]
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCGATCGCTGCTCTGGGCGTGCAATGGGGGATCGGTAAGTACTACCAATACCAACAAGAACAGCAGCAACAGC
GCTTGGATTATCTCGCTCACTATATCTCTCAACTCGACAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAGGGGTTGCAAAATGGGCGCAATAAAACCACTGAGTTTATGAACCTTATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCCGCCAAGCTGCTGGATGTTGATATGCACTCCATTGTT
CATGGTAAAGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTCATGTTTAAAGACGCCTCTATAAAGGGAGG
TAAGCAGCATGGTTAA
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCGATCGCTGCTCTGGGCGTGCAATGGGGGATCGGTAAGTACTACCAATACCAACAAGAACAGCAGCAACAGC
GCTTGGATTATCTCGCTCACTATATCTCTCAACTCGACAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAGGGGTTGCAAAATGGGCGCAATAAAACCACTGAGTTTATGAACCTTATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCCGCCAAGCTGCTGGATGTTGATATGCACTCCATTGTT
CATGGTAAAGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTCATGTTTAAAGACGCCTCTATAAAGGGAGG
TAAGCAGCATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
98.953 |
100 |
0.99 |
| pilN | Vibrio cholerae strain A1552 |
60.452 |
92.67 |
0.56 |