Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   C1N51_RS22530 Genome accession   NZ_CP026316
Coordinates   1137595..1139640 (-) Length   681 a.a.
NCBI ID   WP_103412075.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-90     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1132595..1144640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N51_RS22515 (C1N51_22515) - 1133646..1134632 (+) 987 WP_103411634.1 peptidoglycan DD-metalloendopeptidase family protein -
  C1N51_RS22520 (C1N51_22520) ylqF 1134953..1135897 (+) 945 WP_103411635.1 ribosome biogenesis GTPase YlqF -
  C1N51_RS22525 (C1N51_22525) cqsA 1136187..1137488 (+) 1302 WP_265093784.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  C1N51_RS22530 (C1N51_22530) cqsS 1137595..1139640 (-) 2046 WP_103412075.1 response regulator Regulator
  C1N51_RS22535 (C1N51_22535) - 1139944..1140561 (+) 618 WP_103411636.1 HAD family hydrolase -
  C1N51_RS22540 (C1N51_22540) - 1140636..1141184 (-) 549 WP_103411637.1 GNAT family N-acetyltransferase -
  C1N51_RS22545 (C1N51_22545) - 1141478..1142602 (+) 1125 WP_045369066.1 acyl-CoA desaturase -
  C1N51_RS22550 (C1N51_22550) dcuC 1142985..1144352 (+) 1368 WP_012129600.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 77867.74 Da        Isoelectric Point: 5.6259

>NTDB_id=268105 C1N51_RS22530 WP_103412075.1 1137595..1139640(-) (cqsS) [Vibrio campbellii strain BoB-90]
MDAIRKVYQYAEPNLTLVGWMGFVGFPIYYIVWEFMFPQPYENLPLRILCSILFFGIIYRNRTPFEWRRFLPAYYQVVTT
LCLPCFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHITSVMFAQTFAGIGLATFFAWVAQGFHLELTMDWTHVPIFLFIY
LFGNLFYFRNQVEHEAKVSIAKSFGAGIAHEMRNPLSGLLTSIDVIQSVLPNPKEGKKERYTLSDEDVTLLREVSSDAMK
IIHSGNETIDLLLTSIDENRVSRSTFKKHSAQSVVESAIESFSYKRSTDRFAISLDVRSEFDFLGSDTLLKYVMYNLFKN
AFHHRSSEDFHIHVTMYSDEFANQIVVTDNGSGIAPEVLQSIFQDFYTTGKSGNYGLGLPFCKKVMRSFGGDIRCQSEVG
EWSQFTMTFPTIGSSAVKEIKSELTKLKTILFVSEQNILVSKVTDIARFMGFELTVLDVPAVLKKKEYEFEFDLILIDME
SLDARGSHIDKVESLLSFTEARIVYMFEHHPIQRARSVSFEPIWVETQAWLLNTRATIDRLLYDANYVVPSMPAKPLDST
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNENNVDLILMDIEMPVMDGVEASRQIRGSNKAYASVPI
IAHTGDSSPITLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=268105 C1N51_RS22530 WP_103412075.1 1137595..1139640(-) (cqsS) [Vibrio campbellii strain BoB-90]
ATGGACGCGATTCGCAAAGTATATCAGTACGCAGAACCCAACCTTACCCTCGTAGGATGGATGGGCTTCGTCGGCTTTCC
TATTTACTACATCGTTTGGGAGTTCATGTTCCCGCAGCCTTACGAAAACCTACCGCTTCGTATTCTCTGCTCAATCTTAT
TCTTCGGCATCATTTATCGTAATCGTACGCCATTTGAGTGGCGTAGGTTCTTACCCGCCTATTATCAAGTGGTCACAACG
CTCTGCTTGCCTTGCTTCTTCTTTTACATGTTGTTGATGAACAACTGGTCGAATGTATGGGTGATGTCGTTTATGTCGGC
GATTTTTCTGCACATTCTGCTCGTGCATATCACATCGGTGATGTTTGCCCAGACATTTGCGGGAATTGGTCTGGCGACGT
TTTTTGCTTGGGTAGCACAGGGGTTTCACCTCGAACTCACCATGGATTGGACGCACGTACCGATCTTCTTGTTTATTTAT
CTCTTTGGTAACTTGTTCTATTTCCGAAACCAGGTAGAGCATGAAGCAAAAGTTTCAATCGCAAAGTCTTTTGGGGCAGG
TATCGCCCACGAAATGCGAAACCCACTCAGTGGTTTATTAACTTCTATCGATGTCATTCAATCCGTGTTGCCAAATCCGA
AAGAGGGCAAGAAAGAGCGGTACACGTTAAGTGATGAAGACGTGACACTGTTACGAGAAGTCAGCAGTGACGCAATGAAG
ATCATCCATTCAGGAAACGAAACCATTGATTTGCTTCTTACCTCAATTGATGAGAACCGTGTTTCTCGCTCGACATTTAA
AAAGCACTCTGCACAATCTGTCGTTGAGAGTGCGATTGAAAGTTTCAGTTACAAGCGATCGACAGACCGTTTTGCTATCT
CTTTGGATGTAAGAAGTGAATTCGATTTCTTGGGCAGCGATACATTACTTAAGTATGTGATGTACAACTTGTTCAAGAAC
GCCTTCCACCACCGTAGTTCAGAGGATTTCCATATTCACGTCACCATGTACAGTGATGAATTTGCCAACCAAATTGTGGT
GACTGATAACGGTTCGGGCATTGCACCAGAAGTTCTTCAAAGTATTTTCCAAGATTTCTACACTACGGGTAAGTCAGGAA
ATTATGGCCTTGGATTGCCTTTCTGTAAGAAAGTGATGCGTTCATTTGGTGGTGATATTCGTTGCCAATCAGAAGTCGGC
GAGTGGTCTCAGTTCACGATGACTTTCCCTACGATTGGCTCAAGCGCAGTCAAAGAGATTAAGAGTGAGCTAACCAAGCT
AAAAACGATTTTGTTTGTGAGTGAGCAAAACATCTTAGTTTCGAAAGTGACGGACATTGCTCGTTTTATGGGATTCGAAC
TCACGGTTCTCGATGTTCCTGCGGTTCTTAAAAAGAAAGAATACGAGTTCGAGTTTGATTTGATCCTGATCGACATGGAG
AGTTTAGACGCCCGTGGCAGCCATATAGATAAGGTTGAGTCGTTACTGTCGTTCACTGAAGCTCGCATTGTTTACATGTT
TGAGCACCATCCAATTCAAAGAGCTAGAAGCGTTTCTTTTGAACCTATTTGGGTAGAGACACAAGCCTGGCTTCTGAATA
CTCGAGCGACCATCGACCGTTTACTGTATGACGCTAATTATGTTGTTCCATCGATGCCAGCGAAGCCGCTCGATTCAACA
AACAAGCGAACCATTATGGTGGTTGACGATAATGAGTCTTTACGCAAGTTTACGGCCATGCTGCTTGAGAAGCAGGGTTT
TGAAGTGATCCAAACCGAAGATGGGCTGCAGGCAATCAACGCATTGAATGAGAACAATGTTGACTTAATCCTAATGGACA
TCGAAATGCCTGTGATGGATGGTGTAGAAGCATCTCGTCAAATCAGAGGTTCAAATAAGGCGTACGCTTCGGTGCCTATT
ATTGCGCATACTGGTGATAGCTCACCGATAACACTGGACAAGATTGGTTCATCTGGCATGTCGGATTTCATCGTTAAACC
TGCGGATAAGAACAGGTTGTTCGACAAGATTGCGAACTGGATTTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-410)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.029

100

0.483

Multiple sequence alignment