Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   C1N51_RS22525 Genome accession   NZ_CP026316
Coordinates   1136187..1137488 (+) Length   433 a.a.
NCBI ID   WP_265093784.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-90     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131187..1142488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N51_RS22515 (C1N51_22515) - 1133646..1134632 (+) 987 WP_103411634.1 peptidoglycan DD-metalloendopeptidase family protein -
  C1N51_RS22520 (C1N51_22520) ylqF 1134953..1135897 (+) 945 WP_103411635.1 ribosome biogenesis GTPase YlqF -
  C1N51_RS22525 (C1N51_22525) cqsA 1136187..1137488 (+) 1302 WP_265093784.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  C1N51_RS22530 (C1N51_22530) cqsS 1137595..1139640 (-) 2046 WP_103412075.1 response regulator Regulator
  C1N51_RS22535 (C1N51_22535) - 1139944..1140561 (+) 618 WP_103411636.1 HAD family hydrolase -
  C1N51_RS22540 (C1N51_22540) - 1140636..1141184 (-) 549 WP_103411637.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48895.80 Da        Isoelectric Point: 6.3999

>NTDB_id=268104 C1N51_RS22525 WP_265093784.1 1136187..1137488(+) (cqsA) [Vibrio campbellii strain BoB-90]
MRSLQAHANLCNLTNDTELILVKLYNCQRWRFPVLRRELIMSDKPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKR
PQQGAVVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMSAIFLQDDDSKPAFETQLAEYVGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMNHLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAKTFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRL
EKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQIVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNI
IRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=268104 C1N51_RS22525 WP_265093784.1 1136187..1137488(+) (cqsA) [Vibrio campbellii strain BoB-90]
ATGCGGAGTTTGCAGGCGCACGCAAACTTATGCAACTTGACTAATGACACCGAGCTCATATTGGTCAAACTATATAACTG
TCAGCGCTGGCGTTTTCCTGTGTTACGAAGAGAACTTATTATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTG
TTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGAGCAGAATGAAAACCAAAAGCACTTGGTATTAGGGAAGCGA
CCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACTTGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCG
TGATGCTATCTACGAGCACGATGATAACGTCGTCATGTCTGCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTG
AAACGCAGCTCGCGGAGTATGTCGGTATGGGCAGTTGCCTATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTA
CAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGATTTCTTTGCACACATGTCTTTGTGGGAAGGGATTCGAGCGGC
AGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAACCATTTGCGCAAGCAGATACAGCGTCACGGCTCCGGCGTTA
TCGTTGTGGATTCGGTCTATAGCACGATAGGTACGATCGCCCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACGCATGGGCCAAATGGTTCTGGCTTGGTGAAAGCATTAGAACT
CACTGATCAAGTGGATTTCATTACCGTGAGTTTGGCAAAAACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAA
AGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCATCTTTAGTTCGACGGTCCTGCCACAAGAGATCGTTCGACTT
GAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGCGAACCATGCTGTTCAATCGCGCTAAGGAGCTCAGAACAGG
CCTGAAGCAGATTGGCTTTCATATCCGCAGCGAATCGCAAATTGTGGCGTTAGAGTGCGGTAGTGAGCGAAATACGGAAC
GAGTGCGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGCTGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATT
ATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACATTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCA
CCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(87-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.179

90.069

0.515

Multiple sequence alignment