Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C2U38_RS08870 Genome accession   NZ_CP026235
Coordinates   1783094..1783708 (+) Length   204 a.a.
NCBI ID   WP_103283682.1    Uniprot ID   A0AAW7H3I9
Organism   Citrobacter freundii complex sp. CFNIH3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778094..1788708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U38_RS08850 (C2U38_08855) - 1778455..1780215 (-) 1761 WP_016156136.1 Lon protease family protein -
  C2U38_RS08855 (C2U38_08860) matP 1780401..1780853 (+) 453 WP_103283681.1 macrodomain Ter protein MatP -
  C2U38_RS08860 (C2U38_08865) ompA 1780952..1782010 (-) 1059 WP_016156137.1 porin OmpA -
  C2U38_RS08865 (C2U38_08870) sulA 1782368..1782877 (-) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  C2U38_RS08870 (C2U38_08875) sxy/tfoX 1783094..1783708 (+) 615 WP_103283682.1 TfoX/Sxy family DNA transformation protein Regulator
  C2U38_RS08875 (C2U38_08880) yccS 1783686..1785839 (-) 2154 WP_103284452.1 YccS family putative transporter -
  C2U38_RS08880 (C2U38_08885) - 1785858..1786304 (-) 447 WP_103283683.1 YccF domain-containing protein -
  C2U38_RS08885 (C2U38_08890) helD 1786430..1788484 (+) 2055 WP_103283684.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23267.66 Da        Isoelectric Point: 8.9391

>NTDB_id=267985 C2U38_RS08870 WP_103283682.1 1783094..1783708(+) (sxy/tfoX) [Citrobacter freundii complex sp. CFNIH3]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPRY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=267985 C2U38_RS08870 WP_103283682.1 1783094..1783708(+) (sxy/tfoX) [Citrobacter freundii complex sp. CFNIH3]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAAGGGACATTGCGATCGTTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGAGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.137

100

0.681

Multiple sequence alignment