Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   DZQ17_RS02200 Genome accession   NZ_CP031632
Coordinates   420312..421346 (+) Length   344 a.a.
NCBI ID   WP_011285080.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain MGAS28078     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 415312..426346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZQ17_RS02170 (DZQ17_02170) tsaE 416377..416838 (+) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DZQ17_RS02175 (DZQ17_02175) - 416813..417337 (+) 525 WP_011285082.1 N-acetyltransferase -
  DZQ17_RS02180 (DZQ17_02180) - 417346..418629 (+) 1284 WP_002983372.1 LCP family protein -
  DZQ17_RS02185 (DZQ17_02185) - 418740..419096 (-) 357 WP_002988657.1 hypothetical protein -
  DZQ17_RS02190 (DZQ17_02190) - 419093..419512 (-) 420 WP_011285081.1 HIT family protein -
  DZQ17_RS02195 (DZQ17_02195) pptA 419584..420309 (+) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  DZQ17_RS02200 (DZQ17_02200) pptB 420312..421346 (+) 1035 WP_011285080.1 ABC transporter permease Regulator
  DZQ17_RS02205 (DZQ17_02205) - 421410..422201 (+) 792 WP_002983385.1 phosphotransferase family protein -
  DZQ17_RS02210 (DZQ17_02210) trmB 422201..422836 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DZQ17_RS02220 (DZQ17_02220) rimP 423095..423631 (+) 537 WP_002988815.1 ribosome maturation factor RimP -
  DZQ17_RS02225 (DZQ17_02225) nusA 423806..424963 (+) 1158 WP_002983485.1 transcription termination factor NusA -
  DZQ17_RS02230 (DZQ17_02230) - 424979..425275 (+) 297 WP_002983486.1 YlxR family protein -
  DZQ17_RS02235 (DZQ17_02235) - 425268..425570 (+) 303 WP_011285079.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40272.48 Da        Isoelectric Point: 10.3422

>NTDB_id=267907 DZQ17_RS02200 WP_011285080.1 420312..421346(+) (pptB) [Streptococcus pyogenes strain MGAS28078]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGYAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAILLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=267907 DZQ17_RS02200 WP_011285080.1 420312..421346(+) (pptB) [Streptococcus pyogenes strain MGAS28078]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTATGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAACGACTTTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTATATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427