Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   DZR90_RS07420 Genome accession   NZ_CP031629
Coordinates   1452938..1453972 (-) Length   344 a.a.
NCBI ID   WP_011285080.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain MGAS28278     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1447938..1458972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZR90_RS07385 (DZR90_07375) - 1448714..1449016 (-) 303 WP_011285079.1 YlxQ-related RNA-binding protein -
  DZR90_RS07390 (DZR90_07380) - 1449009..1449305 (-) 297 WP_002983486.1 YlxR family protein -
  DZR90_RS07395 (DZR90_07385) nusA 1449321..1450478 (-) 1158 WP_002983485.1 transcription termination factor NusA -
  DZR90_RS07400 (DZR90_07390) rimP 1450653..1451189 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  DZR90_RS07410 (DZR90_07400) trmB 1451448..1452083 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DZR90_RS07415 (DZR90_07405) - 1452083..1452874 (-) 792 WP_002983385.1 phosphotransferase family protein -
  DZR90_RS07420 (DZR90_07410) pptB 1452938..1453972 (-) 1035 WP_011285080.1 ABC transporter permease Regulator
  DZR90_RS07425 (DZR90_07415) pptA 1453975..1454700 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  DZR90_RS07430 (DZR90_07420) - 1454772..1455191 (+) 420 WP_011285081.1 HIT family protein -
  DZR90_RS07435 (DZR90_07425) - 1455188..1455544 (+) 357 WP_002988657.1 hypothetical protein -
  DZR90_RS07440 (DZR90_07430) - 1455655..1456938 (-) 1284 WP_002983372.1 LCP family protein -
  DZR90_RS07445 (DZR90_07435) - 1456947..1457471 (-) 525 WP_011285082.1 N-acetyltransferase -
  DZR90_RS07450 (DZR90_07440) tsaE 1457446..1457907 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40272.48 Da        Isoelectric Point: 10.3422

>NTDB_id=267663 DZR90_RS07420 WP_011285080.1 1452938..1453972(-) (pptB) [Streptococcus pyogenes strain MGAS28278]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGYAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAILLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=267663 DZR90_RS07420 WP_011285080.1 1452938..1453972(-) (pptB) [Streptococcus pyogenes strain MGAS28278]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTATGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAACGACTTTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTATATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427


Multiple sequence alignment