Detailed information NTG0267505

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: C0971_RS04695
• Genome accession: NZ_CP026143
• Coordinates: 922779..925418 (+)
• Length: 879 a.a.
• NCBI ID: WP_248893117.1
• Uniprot ID: -
• Organism: Bacillus methanolicus strain DFS2
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 917779..930418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C0971_RS04680 (C0971_04735)	-	918308..921421 (+)	3114	WP_248893115.1	carbamoyl phosphate synthase large subunit	-
C0971_RS04685 (C0971_04740)	argF	921418..922371 (+)	954	WP_004433577.1	ornithine carbamoyltransferase	-
C0971_RS04690 (C0971_04745)	-	922497..922676 (+)	180	WP_004433579.1	YjzC family protein	-
C0971_RS04695 (C0971_04750)	clpC	922779..925418 (+)	2640	WP_248893117.1	ATP-dependent chaperone ClpB	Regulator
C0971_RS04700 (C0971_04755)	-	925552..925734 (-)	183	WP_004433583.1	YjzD family protein	-
C0971_RS04705 (C0971_04760)	-	925938..926675 (+)	738	WP_248893119.1	hydrolase	-
C0971_RS04710 (C0971_04765)	-	926756..927619 (+)	864	WP_248893121.1	hypothetical protein	-
C0971_RS04715 (C0971_04770)	med	927787..928737 (+)	951	WP_248893123.1	BMP family ABC transporter substrate-binding protein	Regulator
C0971_RS04720 (C0971_04775)	-	928796..929098 (-)	303	WP_248893125.1	hypothetical protein	-
C0971_RS04725 (C0971_04780)	-	929314..930246 (+)	933	WP_248893127.1	beta-ketoacyl-ACP synthase III	-

Sequence

Protein

• Length: 879 a.a.
• Molecular weight: 99533.94 Da
• Isoelectric Point: 5.2158

>NTDB_id=267505 C0971_RS04695 WP_248893117.1 922779..925418(+) (clpC) [Bacillus methanolicus strain DFS2]
MDINRMTERLQQAFLRAQTLATQNQHQEIDDVHIFLALLEDENSLVHSILEKLQLSSNDFKNKLENLLAKKPQVIGSGVE
QGKVYITPVLQKVLAEAETQMKLFNDEYLSVEHILLAAINTEQSAAGQVLKDFRVTIQSALEAIKEIRGNQRVTTQNPES
TYEALKKYGRDLVAEVKEGKIDPVIGRDSEIRNVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPEGLKDKT
IFALDISSLIAGAKFRGEFEERLKAVLNEIKRSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTL
DEHRKYIEKDPALERRFQPVLVQEPNVEDTISILRGLRERFEIHHGVNIHDRALVAAATLSDRYITDRFLPDKAIDLVDE
ACAMIRTEIDSMPSELDEVTRKVMQLEIEEAALRKETDEASKERLEALQKELADMKEKANSMKAKWMLEKEAIQRVREKR
ETLERLRRELEEAENNYDLNKAAELRHGKIPALEKELKELENEEKEKQGSRLLREEVTEEEIAEIVSRWTGIPISKLVEG
EREKLLRLESILHERVVGQDEAVNLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKALAQSLFDSEDHIIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRNPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSSILLEGTNKDGEITDETKDKVLSQLRGHFRPEFLNRVDEIILFKPLSFEEIKQIVAKLISDLQKRLNDQEIR
LVITNEAKEYIAENGFDPIYGARPLKRFIQRHVETKLAREIVKGSIREQAVVEIGIENGEITLKLRQNETSISGDLTVR

Nucleotide

• Length: 2640 bp

>NTDB_id=267505 C0971_RS04695 WP_248893117.1 922779..925418(+) (clpC) [Bacillus methanolicus strain DFS2]
ATGGACATTAATCGAATGACAGAACGGTTGCAGCAAGCCTTTTTAAGGGCACAAACATTGGCGACTCAAAATCAGCATCA
GGAAATTGATGATGTACATATATTTTTAGCTCTTTTGGAAGATGAGAATAGCCTAGTTCATTCTATTTTGGAAAAACTTC
AACTTTCTTCAAACGATTTTAAGAATAAACTCGAAAATTTGTTAGCTAAGAAACCGCAAGTCATAGGGAGCGGTGTTGAA
CAAGGAAAAGTTTATATCACTCCTGTTTTACAAAAGGTGTTAGCAGAAGCTGAAACCCAGATGAAGCTTTTTAATGATGA
ATATTTGTCTGTTGAACATATCCTGCTTGCAGCTATTAATACAGAACAGTCAGCAGCAGGTCAAGTGTTAAAAGATTTTC
GGGTCACAATTCAATCGGCATTAGAGGCAATTAAAGAAATTAGGGGGAATCAGAGAGTGACAACACAAAACCCGGAATCT
ACCTATGAAGCATTAAAAAAATACGGAAGAGATTTAGTGGCGGAAGTAAAGGAAGGAAAAATTGACCCAGTTATCGGTAG
AGACAGTGAAATTAGAAATGTCATTCGGATCCTTTCAAGAAAAACGAAAAACAACCCCGTCTTAATCGGTGAACCGGGAG
TAGGAAAAACTGCGATTGTTGAAGGCCTCGCACAGAGAATTGTACGAAAGGATGTTCCAGAGGGACTGAAGGATAAAACC
ATTTTTGCTCTTGATATAAGCTCATTAATCGCAGGGGCCAAATTCCGGGGTGAATTTGAAGAAAGATTGAAAGCTGTATT
AAATGAAATAAAGAGAAGTGAAGGGCGCATCCTTTTGTTTATTGACGAGCTTCATACGATTGTTGGAGCCGGGAAAACAG
AAGGGGCTATGGATGCAGGAAATATGCTGAAACCGATGCTTGCCAGAGGAGAATTGCATTGTATCGGAGCGACAACCCTT
GATGAACATCGGAAATATATTGAAAAGGATCCGGCACTGGAGCGAAGGTTCCAGCCAGTGCTCGTTCAGGAACCAAATGT
TGAAGATACGATTTCAATATTAAGAGGTTTAAGAGAGAGATTTGAAATTCATCATGGAGTCAATATTCATGATCGGGCGC
TCGTTGCTGCTGCTACTCTTTCAGATCGTTATATTACGGACCGTTTTCTTCCCGATAAGGCAATTGATTTGGTGGACGAA
GCATGTGCCATGATCAGGACGGAAATTGACTCGATGCCTTCCGAACTGGACGAAGTAACGCGAAAAGTGATGCAACTAGA
AATTGAAGAGGCTGCATTAAGAAAGGAAACTGATGAAGCAAGTAAAGAGCGGCTGGAAGCTCTTCAAAAAGAATTAGCGG
ATATGAAAGAAAAGGCAAATTCTATGAAAGCGAAGTGGATGTTAGAAAAAGAAGCGATTCAAAGAGTTAGGGAAAAACGT
GAAACACTTGAAAGACTTCGCAGAGAGCTTGAGGAAGCTGAAAATAATTATGATTTAAACAAAGCAGCCGAACTGAGACA
TGGGAAAATTCCTGCTTTGGAAAAAGAATTAAAAGAGCTAGAGAATGAAGAGAAAGAAAAACAGGGAAGCCGATTGCTTA
GAGAAGAAGTTACCGAAGAAGAAATTGCTGAAATTGTTTCACGTTGGACGGGTATTCCAATCTCAAAGCTTGTTGAAGGA
GAAAGAGAGAAACTTCTACGTCTAGAGAGTATTTTACATGAACGAGTAGTTGGACAAGATGAAGCAGTAAACCTTGTATC
AGATGCTGTTTTACGTGCAAGAGCAGGGATTAAAGATCCAAACCGTCCGATCGGATCGTTTATTTTTTTAGGCCCAACTG
GTGTAGGGAAAACAGAGCTTGCTAAAGCTCTTGCCCAGTCATTATTTGATTCGGAAGACCATATTATTCGAATTGATATG
TCTGAATATATGGAGAAACATGCCGTATCACGGTTAATTGGAGCTCCGCCGGGATATGTAGGGTATGAAGAAGGAGGACA
ATTAACAGAAGCCGTAAGAAGAAATCCATATTCAGTTATCCTGTTAGATGAGATTGAAAAAGCGCATCCGGAAGTGTTTA
ATATTTTGTTGCAAATGCTTGATGACGGTCGGATTACTGATTCTCAAGGAAGGACTGTTGATTTTAAGAATACGGTAATC
ATTATGACATCAAATATTGGATCATCTATTCTGCTTGAAGGAACGAATAAAGATGGAGAGATTACAGATGAAACAAAAGA
TAAGGTGTTATCTCAATTGCGTGGTCATTTCCGTCCGGAATTTCTTAACCGTGTTGATGAAATCATTTTATTTAAACCGT
TATCATTTGAAGAAATAAAACAAATTGTAGCAAAACTGATTTCTGACTTACAGAAAAGACTTAACGATCAGGAGATCCGC
TTAGTAATTACAAATGAAGCAAAAGAATACATTGCCGAAAATGGTTTTGATCCCATTTATGGAGCAAGACCGCTTAAACG
ATTCATTCAGCGTCATGTTGAAACAAAACTAGCAAGAGAAATTGTCAAAGGAAGCATTAGGGAACAAGCCGTAGTGGAAA
TTGGAATTGAAAATGGAGAAATCACATTAAAACTGAGACAAAATGAAACTTCCATCAGTGGAGACCTCACTGTTCGCTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-853)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (98-149)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• ATPase family associated with various cellular activities (AAA) (AAA) (207-338)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• AAA lid domain (AAA_lid_9) (347-448)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	48.571	99.545	0.483
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.421	100	0.427
clpC	Lactococcus lactis subsp. cremoris KW2	47.399	78.726	0.373