Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | C0971_RS00560 | Genome accession | NZ_CP026143 |
| Coordinates | 106279..108723 (+) | Length | 814 a.a. |
| NCBI ID | WP_248892618.1 | Uniprot ID | - |
| Organism | Bacillus methanolicus strain DFS2 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 101279..113723
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0971_RS00545 (C0971_00540) | - | 104156..104614 (+) | 459 | WP_003348674.1 | CtsR family transcriptional regulator | - |
| C0971_RS00550 (C0971_00545) | - | 104641..105189 (+) | 549 | WP_248893921.1 | UvrB/UvrC motif-containing protein | - |
| C0971_RS00555 (C0971_00550) | - | 105192..106256 (+) | 1065 | WP_248892617.1 | protein arginine kinase | - |
| C0971_RS00560 (C0971_00555) | clpC | 106279..108723 (+) | 2445 | WP_248892618.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| C0971_RS00565 (C0971_00560) | radA | 108861..110240 (+) | 1380 | WP_248892619.1 | DNA repair protein RadA | Machinery gene |
| C0971_RS00570 (C0971_00565) | disA | 110243..111316 (+) | 1074 | WP_248892620.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| C0971_RS00575 (C0971_00570) | - | 111537..112619 (+) | 1083 | WP_003348663.1 | PIN/TRAM domain-containing protein | - |
| C0971_RS00580 (C0971_00575) | ispD | 112686..113384 (+) | 699 | WP_003348661.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
Sequence
Protein
Download Length: 814 a.a. Molecular weight: 90636.49 Da Isoelectric Point: 5.8441
>NTDB_id=267498 C0971_RS00560 WP_248892618.1 106279..108723(+) (clpC) [Bacillus methanolicus strain DFS2]
MMFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLVREGEGIAAKALNALGLGSEKIQKEVENLIGTGKEVSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESGGHQSGTAVSANT
PTLDSLARDLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIMVDEPTPEESIQILKGLRDRYEAHHRVSITDEAIDAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSYTTPPNLKELEMKLEEVRKEKDAAVQSQEFEKAASLRDTEQRLREQLEETKKSWKEKQGQENSEVTVEDIASVV
SSWTGIPVSKLAETETEKLLKLEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
AMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVILLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTVLIMTSNVGAEALKRNKYVGFNIQDGEQDYKDMKGKVMEELKKAFRPEFLNRIDEIIVFHALEKKHLR
EIVTLMANQLMKRLKEQDIHLELTDAAKEKIAEEGYDPEYGARPLRRAIQKHIEDRLSEELLKGAVLTGQHVVIDVEDGE
FVVKTAEPTTTTNS
MMFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLVREGEGIAAKALNALGLGSEKIQKEVENLIGTGKEVSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESGGHQSGTAVSANT
PTLDSLARDLTAIAREGSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIMVDEPTPEESIQILKGLRDRYEAHHRVSITDEAIDAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSYTTPPNLKELEMKLEEVRKEKDAAVQSQEFEKAASLRDTEQRLREQLEETKKSWKEKQGQENSEVTVEDIASVV
SSWTGIPVSKLAETETEKLLKLEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
AMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVILLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTVLIMTSNVGAEALKRNKYVGFNIQDGEQDYKDMKGKVMEELKKAFRPEFLNRIDEIIVFHALEKKHLR
EIVTLMANQLMKRLKEQDIHLELTDAAKEKIAEEGYDPEYGARPLRRAIQKHIEDRLSEELLKGAVLTGQHVVIDVEDGE
FVVKTAEPTTTTNS
Nucleotide
Download Length: 2445 bp
>NTDB_id=267498 C0971_RS00560 WP_248892618.1 106279..108723(+) (clpC) [Bacillus methanolicus strain DFS2]
ATGATGTTTGGACGTTTTACAGAAAGAGCTCAGAAGGTTCTTGCATTAGCACAGGAAGAAGCCATCCGTTTAGGGCACAA
TAATATTGGCACAGAGCATATTTTGTTAGGTCTTGTCCGTGAAGGCGAAGGGATTGCTGCAAAAGCGCTGAACGCTCTTG
GTCTTGGTTCAGAAAAGATTCAAAAAGAGGTAGAAAACCTAATTGGAACAGGAAAAGAAGTGTCACAGACAATCCATTAC
ACTCCAAGAGCGAAAAAAGTGATTGAGCTTTCAATGGATGAAGCGCGTAAACTAGGTCATTCTTACGTTGGGACAGAACA
TATATTATTGGGGTTAATCCGTGAAGGCGAAGGAGTCGCAGCCCGTGTTTTAAATAATCTTGGCGTAAGCCTTAATAAGG
CCCGCCAGCAGGTTCTTCAATTATTGGGCAGCAATGAATCAGGAGGGCATCAAAGCGGTACGGCTGTCAGCGCCAATACG
CCTACATTAGACAGTCTCGCCCGGGATCTAACGGCAATTGCCCGTGAAGGAAGTTTGGATCCGGTCATTGGTCGAAGCAA
AGAGATTCAAAGGGTCATCGAAGTGTTAAGCCGCCGGACAAAAAACAACCCGGTATTAATAGGTGAACCAGGTGTCGGAA
AGACAGCGATTGCAGAAGGTCTTGCCCAGCAAATTGTCAATAATGAAGTTCCTGAAATTTTAAGGGACAAACGGGTTATG
ACCCTTGACATGGGTACAGTGGTAGCAGGAACAAAATACCGCGGCGAGTTTGAGGACCGTTTAAAGAAAGTAATGGATGA
AATCCGCCAGGCCGGCAATATTATTTTATTTATTGATGAGCTGCATACATTAATTGGTGCCGGCGGTGCAGAGGGCGCAA
TTGATGCCTCTAACATTTTGAAGCCTTCATTAGCCCGCGGGGAACTTCAATGTATTGGTGCAACAACGCTGGACGAGTAT
CGGAAGTACATTGAGAAAGATGCTGCTCTTGAGAGACGCTTCCAGCCGATTATGGTTGATGAACCTACGCCAGAAGAATC
CATTCAAATATTAAAGGGTCTCCGTGATCGGTATGAAGCACACCACCGTGTATCCATTACTGATGAAGCAATTGACGCTG
CCGTGAAACTGTCAGATCGGTATATTTCTGATCGTTTCTTGCCGGACAAAGCAATCGATCTAATTGATGAGGCAGGATCA
AAAGTAAGACTGCGTTCTTACACAACACCTCCGAATTTAAAAGAACTAGAAATGAAGCTTGAAGAAGTAAGAAAAGAAAA
AGATGCAGCGGTCCAAAGCCAGGAATTTGAAAAAGCTGCTTCATTAAGGGATACAGAACAACGTTTGCGTGAACAGCTCG
AAGAAACGAAGAAAAGCTGGAAAGAAAAGCAAGGACAGGAGAACAGCGAAGTAACGGTGGAAGATATCGCAAGTGTCGTA
TCAAGCTGGACTGGTATACCTGTTTCCAAGCTTGCAGAGACAGAAACAGAGAAACTTCTAAAACTTGAAGAAATCCTTCA
CTCACGAGTTATTGGCCAGGAAGAAGCTGTGAAGGCAATTTCTAAGGCTGTTCGACGTGCCCGCGCGGGGTTAAAGGATC
CAAAACGCCCAATTGGTTCATTTATTTTCCTTGGTCCCACTGGTGTCGGGAAAACAGAACTTGCCCGTGCTTTGGCTGAA
GCCATGTTCGGTGATGAAGATGCAATGATCCGAATCGATATGTCGGAGTATATGGAGAAACATTCAACTTCCCGTCTTGT
CGGTTCTCCGCCAGGGTATGTCGGTTATGAAGAAGGCGGTCAGCTAACAGAAAAAGTTCGAAGAAAACCATACTCTGTCA
TTCTTCTTGATGAAATTGAAAAAGCACATCCGGATGTCTTTAACATCTTACTGCAAGTGTTGGAAGACGGCCGTTTAACT
GATTCTAAAGGCCGGACAGTTGATTTTCGAAATACTGTGCTAATTATGACATCCAACGTAGGTGCGGAAGCGCTGAAGCG
TAATAAGTATGTAGGATTTAACATTCAAGATGGAGAACAGGACTACAAAGATATGAAAGGAAAAGTGATGGAAGAGCTGA
AAAAAGCGTTCCGTCCTGAATTCCTTAACCGTATCGATGAAATTATTGTGTTCCATGCTTTAGAGAAAAAGCATTTAAGA
GAAATTGTTACGTTAATGGCCAACCAATTAATGAAACGTTTGAAAGAACAAGATATTCACTTAGAATTAACAGATGCAGC
AAAAGAAAAAATTGCGGAAGAAGGATATGATCCGGAATATGGAGCACGCCCGTTGCGCAGGGCAATTCAAAAGCATATTG
AAGACCGATTATCCGAAGAACTGCTCAAAGGGGCAGTGTTAACCGGACAACATGTTGTAATCGACGTGGAAGATGGGGAG
TTTGTCGTTAAAACTGCAGAACCGACTACAACAACGAATTCATAA
ATGATGTTTGGACGTTTTACAGAAAGAGCTCAGAAGGTTCTTGCATTAGCACAGGAAGAAGCCATCCGTTTAGGGCACAA
TAATATTGGCACAGAGCATATTTTGTTAGGTCTTGTCCGTGAAGGCGAAGGGATTGCTGCAAAAGCGCTGAACGCTCTTG
GTCTTGGTTCAGAAAAGATTCAAAAAGAGGTAGAAAACCTAATTGGAACAGGAAAAGAAGTGTCACAGACAATCCATTAC
ACTCCAAGAGCGAAAAAAGTGATTGAGCTTTCAATGGATGAAGCGCGTAAACTAGGTCATTCTTACGTTGGGACAGAACA
TATATTATTGGGGTTAATCCGTGAAGGCGAAGGAGTCGCAGCCCGTGTTTTAAATAATCTTGGCGTAAGCCTTAATAAGG
CCCGCCAGCAGGTTCTTCAATTATTGGGCAGCAATGAATCAGGAGGGCATCAAAGCGGTACGGCTGTCAGCGCCAATACG
CCTACATTAGACAGTCTCGCCCGGGATCTAACGGCAATTGCCCGTGAAGGAAGTTTGGATCCGGTCATTGGTCGAAGCAA
AGAGATTCAAAGGGTCATCGAAGTGTTAAGCCGCCGGACAAAAAACAACCCGGTATTAATAGGTGAACCAGGTGTCGGAA
AGACAGCGATTGCAGAAGGTCTTGCCCAGCAAATTGTCAATAATGAAGTTCCTGAAATTTTAAGGGACAAACGGGTTATG
ACCCTTGACATGGGTACAGTGGTAGCAGGAACAAAATACCGCGGCGAGTTTGAGGACCGTTTAAAGAAAGTAATGGATGA
AATCCGCCAGGCCGGCAATATTATTTTATTTATTGATGAGCTGCATACATTAATTGGTGCCGGCGGTGCAGAGGGCGCAA
TTGATGCCTCTAACATTTTGAAGCCTTCATTAGCCCGCGGGGAACTTCAATGTATTGGTGCAACAACGCTGGACGAGTAT
CGGAAGTACATTGAGAAAGATGCTGCTCTTGAGAGACGCTTCCAGCCGATTATGGTTGATGAACCTACGCCAGAAGAATC
CATTCAAATATTAAAGGGTCTCCGTGATCGGTATGAAGCACACCACCGTGTATCCATTACTGATGAAGCAATTGACGCTG
CCGTGAAACTGTCAGATCGGTATATTTCTGATCGTTTCTTGCCGGACAAAGCAATCGATCTAATTGATGAGGCAGGATCA
AAAGTAAGACTGCGTTCTTACACAACACCTCCGAATTTAAAAGAACTAGAAATGAAGCTTGAAGAAGTAAGAAAAGAAAA
AGATGCAGCGGTCCAAAGCCAGGAATTTGAAAAAGCTGCTTCATTAAGGGATACAGAACAACGTTTGCGTGAACAGCTCG
AAGAAACGAAGAAAAGCTGGAAAGAAAAGCAAGGACAGGAGAACAGCGAAGTAACGGTGGAAGATATCGCAAGTGTCGTA
TCAAGCTGGACTGGTATACCTGTTTCCAAGCTTGCAGAGACAGAAACAGAGAAACTTCTAAAACTTGAAGAAATCCTTCA
CTCACGAGTTATTGGCCAGGAAGAAGCTGTGAAGGCAATTTCTAAGGCTGTTCGACGTGCCCGCGCGGGGTTAAAGGATC
CAAAACGCCCAATTGGTTCATTTATTTTCCTTGGTCCCACTGGTGTCGGGAAAACAGAACTTGCCCGTGCTTTGGCTGAA
GCCATGTTCGGTGATGAAGATGCAATGATCCGAATCGATATGTCGGAGTATATGGAGAAACATTCAACTTCCCGTCTTGT
CGGTTCTCCGCCAGGGTATGTCGGTTATGAAGAAGGCGGTCAGCTAACAGAAAAAGTTCGAAGAAAACCATACTCTGTCA
TTCTTCTTGATGAAATTGAAAAAGCACATCCGGATGTCTTTAACATCTTACTGCAAGTGTTGGAAGACGGCCGTTTAACT
GATTCTAAAGGCCGGACAGTTGATTTTCGAAATACTGTGCTAATTATGACATCCAACGTAGGTGCGGAAGCGCTGAAGCG
TAATAAGTATGTAGGATTTAACATTCAAGATGGAGAACAGGACTACAAAGATATGAAAGGAAAAGTGATGGAAGAGCTGA
AAAAAGCGTTCCGTCCTGAATTCCTTAACCGTATCGATGAAATTATTGTGTTCCATGCTTTAGAGAAAAAGCATTTAAGA
GAAATTGTTACGTTAATGGCCAACCAATTAATGAAACGTTTGAAAGAACAAGATATTCACTTAGAATTAACAGATGCAGC
AAAAGAAAAAATTGCGGAAGAAGGATATGATCCGGAATATGGAGCACGCCCGTTGCGCAGGGCAATTCAAAAGCATATTG
AAGACCGATTATCCGAAGAACTGCTCAAAGGGGCAGTGTTAACCGGACAACATGTTGTAATCGACGTGGAAGATGGGGAG
TTTGTCGTTAAAACTGCAGAACCGACTACAACAACGAATTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
89.383 |
99.509 |
0.889 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.623 |
98.526 |
0.499 |
| clpC | Streptococcus thermophilus LMD-9 |
47.037 |
100 |
0.478 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.424 |
100 |
0.471 |
| clpC | Streptococcus mutans UA159 |
45.4 |
100 |
0.461 |
| clpC | Streptococcus pneumoniae D39 |
46.354 |
99.386 |
0.461 |
| clpC | Streptococcus pneumoniae Rx1 |
46.354 |
99.386 |
0.461 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.23 |
99.386 |
0.459 |
| clpE | Streptococcus mutans UA159 |
56.41 |
76.658 |
0.432 |
| clpE | Streptococcus pneumoniae TIGR4 |
55.276 |
78.01 |
0.431 |
| clpE | Streptococcus pneumoniae R6 |
54.874 |
78.133 |
0.429 |
| clpE | Streptococcus pneumoniae Rx1 |
54.874 |
78.133 |
0.429 |
| clpE | Streptococcus pneumoniae D39 |
54.874 |
78.133 |
0.429 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.752 |
80.344 |
0.424 |