Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   C2U32_RS12695 Genome accession   NZ_CP026125
Coordinates   2558327..2559067 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain ABNIH28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2553327..2564067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U32_RS12675 (C2U32_12670) aroB 2553869..2554951 (-) 1083 WP_002057695.1 3-dehydroquinate synthase -
  C2U32_RS12680 (C2U32_12675) aroK 2554980..2555549 (-) 570 WP_000643712.1 shikimate kinase AroK -
  C2U32_RS12685 (C2U32_12680) pilQ 2555561..2557726 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  C2U32_RS12690 (C2U32_12685) pilP 2557789..2558316 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  C2U32_RS12695 (C2U32_12690) pilO 2558327..2559067 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  C2U32_RS12700 (C2U32_12695) - 2559064..2559704 (-) 641 Protein_2482 PilN domain-containing protein -
  C2U32_RS12705 (C2U32_12700) pilM 2559704..2560762 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  C2U32_RS12710 (C2U32_12705) ponA 2560923..2563478 (+) 2556 WP_005137336.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=267379 C2U32_RS12695 WP_000076101.1 2558327..2559067(-) (pilO) [Acinetobacter baumannii strain ABNIH28]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=267379 C2U32_RS12695 WP_000076101.1 2558327..2559067(-) (pilO) [Acinetobacter baumannii strain ABNIH28]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment