Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   C2U32_RS12570 Genome accession   NZ_CP026125
Coordinates   2531315..2532133 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain ABNIH28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2526315..2537133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U32_RS12555 (C2U32_12550) pilE 2526532..2526957 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  C2U32_RS12560 (C2U32_12555) pilY2 2526954..2527436 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  C2U32_RS12565 (C2U32_12560) pilY1 2527449..2531303 (-) 3855 WP_000768951.1 PilC/PilY family type IV pilus protein Machinery gene
  C2U32_RS12570 (C2U32_12565) pilX 2531315..2532133 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C2U32_RS12575 (C2U32_12570) pilW 2532130..2533131 (-) 1002 WP_002057668.1 PilW family protein Machinery gene
  C2U32_RS12580 (C2U32_12575) pilV 2533132..2533692 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  C2U32_RS12585 (C2U32_12580) fimU 2533686..2534159 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C2U32_RS12590 (C2U32_12585) ispH 2534329..2535279 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C2U32_RS12595 (C2U32_12590) gmk 2535402..2536031 (+) 630 WP_000015937.1 guanylate kinase -
  C2U32_RS12600 (C2U32_12595) rpoZ 2536104..2536382 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  C2U32_RS12605 (C2U32_12600) - 2536421..2536551 (+) 131 Protein_2463 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=267373 C2U32_RS12570 WP_000149374.1 2531315..2532133(-) (pilX) [Acinetobacter baumannii strain ABNIH28]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=267373 C2U32_RS12570 WP_000149374.1 2531315..2532133(-) (pilX) [Acinetobacter baumannii strain ABNIH28]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment