Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | C2U32_RS04275 | Genome accession | NZ_CP026125 |
| Coordinates | 835419..835799 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836906.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain ABNIH28 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 830419..840799
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2U32_RS04245 (C2U32_04240) | kdsB | 831322..832083 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| C2U32_RS04250 (C2U32_04245) | - | 832095..833075 (+) | 981 | WP_001075420.1 | DNA polymerase III subunit delta' | - |
| C2U32_RS04255 (C2U32_04250) | - | 833087..833428 (+) | 342 | WP_001183025.1 | PilZ domain-containing protein | - |
| C2U32_RS04260 (C2U32_04255) | - | 833446..834219 (+) | 774 | WP_000497295.1 | TatD family hydrolase | - |
| C2U32_RS04265 (C2U32_04260) | - | 834257..834865 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| C2U32_RS04270 (C2U32_04265) | - | 834875..835429 (+) | 555 | WP_000841378.1 | type II secretion system protein | - |
| C2U32_RS04275 (C2U32_04270) | xcpV | 835419..835799 (+) | 381 | WP_000836906.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| C2U32_RS04280 (C2U32_04275) | xcpW | 835799..836500 (+) | 702 | WP_000594587.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| C2U32_RS04285 (C2U32_04280) | gspK | 836500..837459 (+) | 960 | WP_000301463.1 | type II secretion system minor pseudopilin GspK | - |
| C2U32_RS04290 (C2U32_04285) | - | 837689..838285 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| C2U32_RS04295 (C2U32_04290) | ung | 838336..839049 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| C2U32_RS04300 (C2U32_04295) | - | 839046..840170 (+) | 1125 | WP_086384405.1 | enoyl-CoA hydratase/isomerase family protein | - |
| C2U32_RS04305 (C2U32_04300) | tadA | 840177..840680 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13984.21 Da Isoelectric Point: 9.8006
>NTDB_id=267362 C2U32_RS04275 WP_000836906.1 835419..835799(+) (xcpV) [Acinetobacter baumannii strain ABNIH28]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTHSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTHSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=267362 C2U32_RS04275 WP_000836906.1 835419..835799(+) (xcpV) [Acinetobacter baumannii strain ABNIH28]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCACTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCGGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCACTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCGGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |