Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   SPD_RS09855 Genome accession   NC_008533
Coordinates   1837577..1838530 (-) Length   317 a.a.
NCBI ID   WP_000345135.1    Uniprot ID   A0A2U3RW99
Organism   Streptococcus pneumoniae D39     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1832577..1843530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPD_RS09830 (SPD_1848) - 1833338..1833961 (-) 624 WP_000932644.1 hypothetical protein -
  SPD_RS09835 (SPD_1849) jag 1834012..1834998 (-) 987 WP_000260012.1 RNA-binding cell elongation regulator Jag/EloR -
  SPD_RS09840 (SPD_1850) - 1835017..1835841 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  SPD_RS09845 (SPD_1851) rnpA 1835816..1836187 (-) 372 WP_000739246.1 ribonuclease P protein component -
  SPD_RS11950 (SPD_1852) - 1836204..1836335 (-) 132 WP_000768904.1 hypothetical protein -
  SPD_RS09850 (SPD_1853) - 1836336..1837526 (-) 1191 WP_000167757.1 acetate kinase -
  SPD_RS09855 (SPD_1854) comYH 1837577..1838530 (-) 954 WP_000345135.1 class I SAM-dependent methyltransferase Machinery gene
  SPD_RS09860 - 1838591..1839185 (-) 595 Protein_1835 class I SAM-dependent methyltransferase -
  SPD_RS09865 (SPD_1857) comGG/cglG 1839322..1839735 (-) 414 WP_000265622.1 competence type IV pilus minor pilin ComGG Machinery gene
  SPD_RS09870 (SPD_1858) comGF/cglF 1839713..1840174 (-) 462 WP_000250534.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPD_RS09875 (SPD_1859) comGE/cglE 1840137..1840439 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPD_RS09880 (SPD_1860) comGD/cglD 1840402..1840806 (-) 405 WP_000588026.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPD_RS09885 (SPD_1861) comGC/cglC 1840799..1841125 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  SPD_RS09890 (SPD_1862) comGB/cglB 1841127..1842143 (-) 1017 WP_074196785.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPD_RS09895 (SPD_1863) comGA/cglA/cilD 1842091..1843032 (-) 942 WP_000249564.1 competence type IV pilus ATPase ComGA Machinery gene
  SPD_RS09900 (SPD_1864) - 1843108..1843473 (-) 366 WP_000286412.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35756.99 Da        Isoelectric Point: 4.2748

>NTDB_id=26709 SPD_RS09855 WP_000345135.1 1837577..1838530(-) (comYH) [Streptococcus pneumoniae D39]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKENNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGAIFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=26709 SPD_RS09855 WP_000345135.1 1837577..1838530(-) (comYH) [Streptococcus pneumoniae D39]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAGGAGAACAATC
AAACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTATTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGCCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U3RW99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment