Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BAOM_RS21865 Genome accession   NZ_CP026095
Coordinates   4428326..4429720 (-) Length   464 a.a.
NCBI ID   WP_127762103.1    Uniprot ID   A0A3T0KYA4
Organism   Peribacillus asahii strain OM18     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4423326..4434720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAOM_RS21835 (BAOM_4694) flgL 4423482..4424363 (-) 882 WP_127762097.1 flagellar hook-associated protein FlgL -
  BAOM_RS21840 (BAOM_4695) flgK 4424382..4425935 (-) 1554 WP_127762098.1 flagellar hook-associated protein FlgK -
  BAOM_RS21845 (BAOM_4696) - 4425960..4426430 (-) 471 WP_164853308.1 flagellar protein FlgN -
  BAOM_RS21850 (BAOM_4697) flgM 4426507..4426770 (-) 264 WP_127762100.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAOM_RS21855 (BAOM_4698) - 4427131..4427541 (-) 411 WP_373995351.1 TIGR03826 family flagellar region protein -
  BAOM_RS21860 (BAOM_4699) - 4427641..4428291 (-) 651 WP_257467482.1 ComF family protein -
  BAOM_RS21865 (BAOM_4700) comFA 4428326..4429720 (-) 1395 WP_127762103.1 DEAD/DEAH box helicase Machinery gene
  BAOM_RS21870 (BAOM_4701) - 4429832..4430821 (+) 990 WP_127762104.1 nuclease-related domain-containing protein -
  BAOM_RS21875 (BAOM_4703) - 4430930..4431772 (-) 843 WP_127762105.1 DegV family protein -
  BAOM_RS21880 (BAOM_4704) - 4431902..4432585 (-) 684 WP_127762106.1 response regulator transcription factor -
  BAOM_RS21885 (BAOM_4705) - 4432636..4433778 (-) 1143 WP_127762107.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52206.30 Da        Isoelectric Point: 8.2713

>NTDB_id=267086 BAOM_RS21865 WP_127762103.1 4428326..4429720(-) (comFA) [Peribacillus asahii strain OM18]
MNTISHSPLSIPQKAYSTELQHHLFGRQLLAAEIPFSLDVLETHIEQGYVAKTFGIELDYCIRCGNQDKQLFYTFPCAIC
GQLCTYCRSCIMMGRVSECTPLYTWTGPAYEFHVPKSVMNWSGTLSEGQQTASDRVKQAILHQEELLVWAVCGAGKTEVL
FAGIEAGLLAGKRICIATPRTDVVLELAPRLKKAFPFIEVAALYGGSDDRHKLAPLSVATTHQLFRFKEAFDAIIIDEVD
AFPYSMDPSLHYAVQKAKKQTATTIYLTATPSKQMQKQYRSGKLQAVTIPARYHRQPIPVPEMKWCSNWAKQFQQKKIPR
PVQDWVNERIERQIPILLFFSSIAVMETARPLFQNLPAVYAEHPNRKERVQALRDGELQGLLTTTILERGVTIERLEVAV
IGAEHEVFTESALVQIAGRVGRSFAYPTGNITFFHYGKSKAMVEAIKHITSMNEEARKHGLLDG

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=267086 BAOM_RS21865 WP_127762103.1 4428326..4429720(-) (comFA) [Peribacillus asahii strain OM18]
ATGAACACGATTTCTCACTCCCCGCTTTCTATCCCTCAAAAAGCTTATTCCACTGAACTTCAGCATCATTTATTTGGCCG
TCAATTGTTAGCGGCTGAAATTCCGTTTTCCCTCGATGTACTTGAGACACATATTGAACAAGGTTATGTCGCAAAAACGT
TTGGCATTGAATTGGATTATTGTATTCGATGCGGTAACCAAGACAAGCAGTTATTTTATACATTTCCGTGTGCGATATGC
GGGCAGCTCTGCACGTATTGTCGTTCGTGCATTATGATGGGTCGTGTGAGCGAATGTACGCCGCTGTATACGTGGACTGG
CCCGGCTTATGAGTTCCATGTCCCGAAAAGCGTGATGAATTGGTCAGGTACGCTTTCCGAAGGGCAGCAAACTGCATCGG
ACCGAGTGAAGCAGGCGATTCTTCATCAAGAAGAGCTTCTCGTTTGGGCTGTTTGTGGAGCTGGAAAAACAGAAGTGCTG
TTTGCGGGAATCGAAGCAGGACTGCTTGCTGGAAAGCGGATTTGTATTGCAACACCGCGAACAGATGTCGTACTGGAATT
AGCGCCTCGGTTGAAAAAAGCATTCCCATTTATCGAAGTGGCCGCCCTTTATGGAGGCAGTGATGATCGACATAAGCTAG
CACCGCTTAGCGTGGCGACGACACATCAGCTTTTTCGCTTTAAAGAAGCGTTTGATGCCATAATTATTGATGAAGTTGAT
GCTTTTCCATATTCGATGGATCCTTCGCTTCACTATGCTGTACAAAAAGCAAAGAAGCAGACGGCTACGACCATTTATTT
AACGGCCACACCATCGAAACAAATGCAAAAGCAATATCGAAGTGGCAAACTTCAAGCGGTCACTATCCCGGCACGTTATC
ATCGCCAGCCGATTCCGGTCCCTGAGATGAAATGGTGCAGCAACTGGGCGAAGCAGTTTCAGCAAAAGAAAATTCCGCGT
CCCGTTCAAGATTGGGTGAATGAACGAATCGAACGCCAAATTCCTATTTTATTATTCTTCTCAAGCATTGCGGTGATGGA
AACCGCCCGTCCTCTTTTTCAGAATCTCCCGGCTGTTTATGCCGAGCATCCGAATCGGAAAGAACGCGTGCAGGCATTAC
GAGACGGTGAACTGCAAGGTTTATTAACAACGACGATTTTAGAACGAGGCGTGACGATTGAGCGTTTAGAGGTTGCGGTT
ATTGGAGCGGAGCACGAAGTTTTTACCGAAAGCGCCCTTGTCCAAATTGCCGGCCGCGTTGGACGCAGTTTCGCTTACCC
AACAGGGAACATTACTTTTTTTCATTATGGAAAAAGCAAGGCAATGGTAGAAGCGATTAAACATATTACATCGATGAATG
AAGAAGCGAGAAAGCATGGGCTTCTCGATGGCTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(125-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T0KYA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50

97.414

0.487

Multiple sequence alignment