Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2U64_RS02225 Genome accession   NZ_CP026089
Coordinates   227436..228023 (+) Length   195 a.a.
NCBI ID   WP_002122021.1    Uniprot ID   A0A8I1HCN3
Organism   Acinetobacter pittii strain WCHAP005069     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 228439..229449 227436..228023 flank 416


Gene organization within MGE regions


Location: 227436..229449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U64_RS02225 (C2U64_02220) ssb 227436..228023 (+) 588 WP_002122021.1 single-stranded DNA-binding protein Machinery gene
  C2U64_RS02230 (C2U64_02225) - 228179..228430 (+) 252 Protein_201 site-specific integrase -
  C2U64_RS02235 (C2U64_02230) - 228439..229407 (-) 969 WP_005804963.1 IS30 family transposase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21256.03 Da        Isoelectric Point: 6.4822

>NTDB_id=266997 C2U64_RS02225 WP_002122021.1 227436..228023(+) (ssb) [Acinetobacter pittii strain WCHAP005069]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQSFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGSQG
SFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=266997 C2U64_RS02225 WP_002122021.1 227436..228023(+) (ssb) [Acinetobacter pittii strain WCHAP005069]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAAGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGCCAAAACAGCGGTGGTTATGGTAGCCAAGGT
AGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.239

100

0.538
  ssb Vibrio cholerae strain A1552

42.857

100

0.446
  ssb Neisseria meningitidis MC58

39.899

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.384

100

0.39

Multiple sequence alignment