Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   C2E46_RS01035 Genome accession   NZ_CP026082
Coordinates   169607..170653 (+) Length   348 a.a.
NCBI ID   WP_000410290.1    Uniprot ID   A0AAD3A438
Organism   Streptococcus agalactiae strain YZ1605     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 164607..175653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E46_RS01020 (C2E46_01030) - 165865..167520 (+) 1656 WP_017643615.1 peptide ABC transporter substrate-binding protein -
  C2E46_RS01025 (C2E46_01035) - 167639..168553 (+) 915 WP_000598965.1 ABC transporter permease -
  C2E46_RS01030 (C2E46_01040) - 168563..169594 (+) 1032 WP_000764052.1 ABC transporter permease -
  C2E46_RS01035 (C2E46_01045) oppD 169607..170653 (+) 1047 WP_000410290.1 ABC transporter ATP-binding protein Regulator
  C2E46_RS01040 (C2E46_01050) amiF 170653..171585 (+) 933 WP_000138507.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38772.28 Da        Isoelectric Point: 4.7644

>NTDB_id=266876 C2E46_RS01035 WP_000410290.1 169607..170653(+) (oppD) [Streptococcus agalactiae strain YZ1605]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGNVQFKGRNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQVERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=266876 C2E46_RS01035 WP_000410290.1 169607..170653(+) (oppD) [Streptococcus agalactiae strain YZ1605]
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCGGGGAATGTTCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGCGGGAATGAGATTTCTATGATTTTTCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGTATGCAAATAGCAGAACCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TCGAACTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAATGATTACCCACATCAGTGGTCTGGAGGAATG
CGTCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTGAACTTAATGAAAAAAATTCAAGTAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGAGTCGTTGCAGGGATGGCAGATCGTGTAGCAGTTATGTATGCAGGGAAAATTGTTGAATTTGGAACTGTT
GATGAGGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCAGGAACACCACCAGATTTGTTGAATCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

78.963

99.713

0.787
  amiE Streptococcus salivarius strain HSISS4

55.162

97.414

0.537
  amiE Streptococcus thermophilus LMG 18311

54.572

97.414

0.532
  amiE Streptococcus thermophilus LMD-9

54.572

97.414

0.532

Multiple sequence alignment