Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SPD_RS02500 Genome accession   NC_008533
Coordinates   474400..475131 (+) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae D39     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 469400..480131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPD_RS02475 (SPD_0460) dnaK 469589..471412 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  SPD_RS02480 - 471414..471770 (+) 357 WP_000114427.1 hypothetical protein -
  SPD_RS02485 (SPD_0461) dnaJ 472172..473290 (+) 1119 WP_001066302.1 molecular chaperone DnaJ -
  SPD_RS02490 (SPD_0462) - 473625..473912 (-) 288 WP_000777760.1 hypothetical protein -
  SPD_RS02495 (SPD_0463) - 473922..474332 (-) 411 WP_001278301.1 HIT family protein -
  SPD_RS02500 (SPD_0464) pptA 474400..475131 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  SPD_RS02505 (SPD_0465) - 475128..476177 (+) 1050 WP_000653770.1 ABC transporter permease -
  SPD_RS02510 (SPD_0466) - 476345..476674 (-) 330 WP_000132569.1 hypothetical protein -
  SPD_RS02515 (SPD_0467) - 476950..477288 (+) 339 WP_000682124.1 LytTR family DNA-binding domain-containing protein -
  SPD_RS02520 (SPD_0468) comE/blpR 477293..478030 (+) 738 WP_001219139.1 response regulator transcription factor Regulator
  SPD_RS02525 (SPD_0469) - 478044..479384 (+) 1341 WP_001017622.1 sensor histidine kinase -
  SPD_RS02530 (SPD_0470) blpC 479426..479581 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=26685 SPD_RS02500 WP_000889919.1 474400..475131(+) (pptA) [Streptococcus pneumoniae D39]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=26685 SPD_RS02500 WP_000889919.1 474400..475131(+) (pptA) [Streptococcus pneumoniae D39]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment