Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   RK65_RS08525 Genome accession   NZ_CP026077
Coordinates   1657043..1658029 (+) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1652043..1663029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK65_RS08500 (RK65_008500) opp4B 1652256..1653218 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  RK65_RS08505 (RK65_008505) opp4C 1653230..1654111 (+) 882 WP_001180262.1 oligopeptide ABC transporter permease -
  RK65_RS08510 (RK65_008510) trpS 1654153..1655142 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  RK65_RS08515 (RK65_008515) spxA 1655437..1655832 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  RK65_RS08520 (RK65_008520) mecA 1656203..1656922 (+) 720 WP_001217730.1 adaptor protein MecA -
  RK65_RS08525 (RK65_008525) coiA 1657043..1658029 (+) 987 WP_000959287.1 competence protein CoiA family protein Machinery gene
  RK65_RS08530 (RK65_008530) pepF 1658077..1659885 (+) 1809 WP_000082731.1 oligoendopeptidase F -
  RK65_RS08535 (RK65_008535) yjbH 1660345..1661151 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  RK65_RS08540 (RK65_008540) - 1661174..1661539 (-) 366 WP_000214065.1 truncated hemoglobin YjbI -
  RK65_RS08545 (RK65_008545) - 1661643..1662236 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  RK65_RS08550 (RK65_008550) - 1662422..1662769 (+) 348 WP_001242102.1 hypothetical protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=266766 RK65_RS08525 WP_000959287.1 1657043..1658029(+) (coiA) [Staphylococcus aureus strain FDAARGOS_7]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=266766 RK65_RS08525 WP_000959287.1 1657043..1658029(+) (coiA) [Staphylococcus aureus strain FDAARGOS_7]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991

  coiA Staphylococcus aureus N315

97.866

100

0.979


Multiple sequence alignment