Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RK65_RS06500 Genome accession   NZ_CP026077
Coordinates   1266788..1267357 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1261788..1272357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK65_RS06475 (RK65_006475) cysE 1263001..1263648 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  RK65_RS06480 (RK65_006480) cysS 1263632..1265032 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  RK65_RS06485 (RK65_006485) - 1265025..1265429 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  RK65_RS06490 (RK65_006490) rlmB 1265437..1266183 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RK65_RS06495 (RK65_006495) - 1266183..1266707 (+) 525 WP_000664738.1 NYN domain-containing protein -
  RK65_RS06500 (RK65_006500) sigH 1266788..1267357 (+) 570 WP_000872873.1 RNA polymerase sigma factor Regulator
  RK65_RS06505 (RK65_006505) rpmG 1267472..1267615 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  RK65_RS06510 (RK65_006510) secE 1267671..1267853 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RK65_RS06515 (RK65_006515) nusG 1267866..1268414 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RK65_RS06520 (RK65_006520) rplK 1268595..1269017 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  RK65_RS06525 (RK65_006525) rplA 1269225..1269917 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  RK65_RS06535 (RK65_006535) rplJ 1270189..1270689 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  RK65_RS06540 (RK65_006540) rplL 1270732..1271100 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RK65_RS06545 (RK65_006545) - 1271275..1271883 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=266761 RK65_RS06500 WP_000872873.1 1266788..1267357(+) (sigH) [Staphylococcus aureus strain FDAARGOS_7]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=266761 RK65_RS06500 WP_000872873.1 1266788..1267357(+) (sigH) [Staphylococcus aureus strain FDAARGOS_7]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment