Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RK63_RS13340 Genome accession   NZ_CP026076
Coordinates   2541023..2541709 (-) Length   228 a.a.
NCBI ID   WP_078103761.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_4     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2536023..2546709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK63_RS13320 (RK63_013320) rpsT 2536937..2537188 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  RK63_RS13325 (RK63_013325) holA 2537233..2538207 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  RK63_RS13330 (RK63_013330) comEC 2538264..2540465 (-) 2202 WP_001566051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RK63_RS13335 (RK63_013335) - 2540470..2540931 (-) 462 WP_000439693.1 ComE operon protein 2 -
  RK63_RS13340 (RK63_013340) comEA 2541023..2541709 (-) 687 WP_078103761.1 ComEA family DNA-binding protein Machinery gene
  RK63_RS13345 (RK63_013345) - 2541749..2542465 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  RK63_RS13350 (RK63_013350) rsfS 2542468..2542821 (-) 354 WP_001088022.1 ribosome silencing factor -
  RK63_RS13355 (RK63_013355) yqeK 2542822..2543406 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  RK63_RS13360 (RK63_013360) nadD 2543396..2543965 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  RK63_RS13365 (RK63_013365) yhbY 2543968..2544258 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  RK63_RS13370 (RK63_013370) aroE 2544262..2545068 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  RK63_RS13375 (RK63_013375) yqeH 2545082..2546182 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25879.54 Da        Isoelectric Point: 9.3305

>NTDB_id=266742 RK63_RS13340 WP_078103761.1 2541023..2541709(-) (comEA) [Staphylococcus aureus strain FDAARGOS_4]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGLVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=266742 RK63_RS13340 WP_078103761.1 2541023..2541709(-) (comEA) [Staphylococcus aureus strain FDAARGOS_4]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCTTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974
  comEA Staphylococcus aureus N315

96.916

99.561

0.965

Multiple sequence alignment