Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RL05_RS09415 | Genome accession | NZ_CP026074 |
| Coordinates | 1741586..1742089 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain FDAARGOS_47 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1737526..1764239 | 1741586..1742089 | within | 0 |
Gene organization within MGE regions
Location: 1737526..1764239
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RL05_RS09380 (RL05_009380) | - | 1737526..1738371 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| RL05_RS09385 (RL05_009385) | - | 1738525..1739406 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| RL05_RS09390 (RL05_009390) | - | 1739436..1739639 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| RL05_RS09395 (RL05_009395) | ychF | 1739651..1740748 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| RL05_RS09400 (RL05_009400) | - | 1740834..1741025 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| RL05_RS09410 (RL05_009410) | rpsF | 1741269..1741565 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| RL05_RS09415 (RL05_009415) | ssbA | 1741586..1742089 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| RL05_RS09420 (RL05_009420) | rpsR | 1742141..1742383 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| RL05_RS09425 (RL05_009425) | - | 1742499..1743605 (-) | 1107 | WP_000715303.1 | Abi family protein | - |
| RL05_RS09430 (RL05_009430) | - | 1743786..1744997 (-) | 1212 | WP_000270133.1 | site-specific integrase | - |
| RL05_RS09435 (RL05_009435) | - | 1745453..1746148 (-) | 696 | WP_000668213.1 | helix-turn-helix domain-containing protein | - |
| RL05_RS09440 (RL05_009440) | - | 1746292..1746504 (+) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| RL05_RS09445 (RL05_009445) | - | 1746505..1746777 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| RL05_RS09450 (RL05_009450) | - | 1746789..1746935 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| RL05_RS09455 (RL05_009455) | - | 1746928..1747137 (+) | 210 | WP_001058486.1 | hypothetical protein | - |
| RL05_RS09460 (RL05_009460) | - | 1747140..1747463 (+) | 324 | WP_001103945.1 | DUF1474 family protein | - |
| RL05_RS09465 (RL05_009465) | - | 1747528..1748397 (+) | 870 | WP_001002724.1 | primase alpha helix C-terminal domain-containing protein | - |
| RL05_RS09470 (RL05_009470) | - | 1748411..1750120 (+) | 1710 | WP_000447455.1 | DUF927 domain-containing protein | - |
| RL05_RS09475 (RL05_009475) | - | 1750433..1750813 (+) | 381 | WP_000356939.1 | hypothetical protein | - |
| RL05_RS09480 (RL05_009480) | - | 1750810..1751451 (+) | 642 | WP_001019767.1 | hypothetical protein | - |
| RL05_RS09485 (RL05_009485) | - | 1751901..1752242 (+) | 342 | WP_001190615.1 | hypothetical protein | - |
| RL05_RS09490 (RL05_009490) | - | 1752254..1752832 (+) | 579 | WP_000846280.1 | hypothetical protein | - |
| RL05_RS09495 (RL05_009495) | - | 1752850..1753068 (+) | 219 | WP_000536904.1 | capsid morphogenesis B protein | - |
| RL05_RS09500 (RL05_009500) | - | 1753119..1753646 (+) | 528 | WP_000771378.1 | spore coat protein | - |
| RL05_RS09505 (RL05_009505) | - | 1753778..1753990 (+) | 213 | WP_045181470.1 | hypothetical protein | - |
| RL05_RS09510 (RL05_009510) | - | 1753987..1754556 (+) | 570 | WP_001293074.1 | terminase small subunit | - |
| RL05_RS09515 (RL05_009515) | - | 1754771..1755343 (+) | 573 | WP_000337708.1 | hypothetical protein | - |
| RL05_RS09520 (RL05_009520) | - | 1755364..1755660 (+) | 297 | WP_000523349.1 | hypothetical protein | - |
| RL05_RS09525 (RL05_009525) | - | 1755660..1756100 (+) | 441 | WP_000146510.1 | protein-export chaperone SecB | - |
| RL05_RS09530 (RL05_009530) | - | 1756406..1757164 (+) | 759 | WP_001059540.1 | hypothetical protein | - |
| RL05_RS15480 | - | 1757616..1757732 (+) | 117 | Protein_1782 | hypothetical protein | - |
| RL05_RS09535 (RL05_009535) | - | 1757975..1758127 (+) | 153 | WP_001795626.1 | hypothetical protein | - |
| RL05_RS09540 (RL05_009540) | - | 1758198..1758308 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| RL05_RS09545 (RL05_009545) | - | 1758310..1758495 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| RL05_RS09550 (RL05_009550) | - | 1759291..1760229 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| RL05_RS09555 (RL05_009555) | - | 1760268..1760981 (-) | 714 | Protein_1787 | tyrosine-type recombinase/integrase | - |
| RL05_RS09560 (RL05_009560) | selX | 1761187..1761798 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| RL05_RS09565 (RL05_009565) | - | 1762167..1762535 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| RL05_RS09570 (RL05_009570) | - | 1762716..1763288 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| RL05_RS09575 (RL05_009575) | - | 1763425..1763688 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| RL05_RS09580 (RL05_009580) | - | 1763988..1764239 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=266696 RL05_RS09415 WP_000934799.1 1741586..1742089(+) (ssbA) [Staphylococcus aureus strain FDAARGOS_47]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=266696 RL05_RS09415 WP_000934799.1 1741586..1742089(+) (ssbA) [Staphylococcus aureus strain FDAARGOS_47]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |