Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RK85_RS08695 | Genome accession | NZ_CP026070 |
| Coordinates | 1693015..1693410 (+) | Length | 131 a.a. |
| NCBI ID | WP_000932694.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain FDAARGOS_27 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1688015..1698410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RK85_RS08665 (RK85_008665) | - | 1689273..1689677 (+) | 405 | WP_001094394.1 | F0F1 ATP synthase subunit epsilon | - |
| RK85_RS08670 (RK85_008670) | - | 1690015..1690107 (+) | 93 | WP_001790611.1 | hypothetical protein | - |
| RK85_RS08675 (RK85_008675) | - | 1690239..1690472 (+) | 234 | WP_000384523.1 | DUF1146 family protein | - |
| RK85_RS08680 (RK85_008680) | murA | 1690583..1691848 (+) | 1266 | WP_000358006.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| RK85_RS08685 (RK85_008685) | fabZ | 1691882..1692322 (+) | 441 | WP_000447678.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| RK85_RS08690 (RK85_008690) | - | 1692381..1692821 (-) | 441 | WP_000846746.1 | YwpF-like family protein | - |
| RK85_RS08695 (RK85_008695) | ssb | 1693015..1693410 (+) | 396 | WP_000932694.1 | single-stranded DNA-binding protein | Machinery gene |
| RK85_RS08700 (RK85_008700) | sceD | 1693799..1694494 (+) | 696 | WP_000752008.1 | lytic transglycosylase SceD | - |
| RK85_RS08705 (RK85_008705) | tenA | 1694880..1695569 (+) | 690 | WP_000396076.1 | thiaminase II | - |
| RK85_RS08710 (RK85_008710) | thiD | 1695562..1696392 (+) | 831 | WP_000594959.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| RK85_RS08715 (RK85_008715) | thiM | 1696376..1697167 (+) | 792 | WP_001108479.1 | hydroxyethylthiazole kinase | - |
| RK85_RS08720 (RK85_008720) | thiE | 1697169..1697810 (+) | 642 | WP_000483153.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15042.09 Da Isoelectric Point: 5.6824
>NTDB_id=266516 RK85_RS08695 WP_000932694.1 1693015..1693410(+) (ssb) [Staphylococcus aureus strain FDAARGOS_27]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI
Nucleotide
Download Length: 396 bp
>NTDB_id=266516 RK85_RS08695 WP_000932694.1 1693015..1693410(+) (ssb) [Staphylococcus aureus strain FDAARGOS_27]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
100 |
100 |
1 |
| ssb | Staphylococcus aureus MW2 |
99.237 |
100 |
0.992 |