Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   RK85_RS00480 Genome accession   NZ_CP026070
Coordinates   87604..88173 (+) Length   189 a.a.
NCBI ID   WP_000287271.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_27     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 82604..93173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK85_RS00445 (RK85_000445) - 83817..84089 (-) 273 WP_001790097.1 lactococcin 972 family bacteriocin -
  RK85_RS00450 (RK85_000450) - 84099..84200 (-) 102 WP_001790623.1 hypothetical protein -
  RK85_RS14480 (RK85_000455) - 84739..84816 (-) 78 WP_099112139.1 putative holin-like toxin -
  RK85_RS00460 (RK85_000460) - 85117..85719 (-) 603 WP_001033867.1 CPBP family glutamic-type intramembrane protease -
  RK85_RS00465 (RK85_000465) - 85734..85910 (-) 177 WP_000214898.1 YkvS family protein -
  RK85_RS00470 (RK85_000470) - 86109..87095 (+) 987 WP_000668820.1 lipoate--protein ligase -
  RK85_RS00475 (RK85_000475) - 87176..87394 (-) 219 WP_000876826.1 IDEAL domain-containing protein -
  RK85_RS00480 (RK85_000480) comK/comK1 87604..88173 (+) 570 WP_000287271.1 competence protein ComK Regulator
  RK85_RS00495 (RK85_000495) - 88660..90171 (-) 1512 WP_000414177.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  RK85_RS00500 (RK85_000500) - 90310..91668 (-) 1359 WP_000021864.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22600.89 Da        Isoelectric Point: 9.8190

>NTDB_id=266500 RK85_RS00480 WP_000287271.1 87604..88173(+) (comK/comK1) [Staphylococcus aureus strain FDAARGOS_27]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAKTNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=266500 RK85_RS00480 WP_000287271.1 87604..88173(+) (comK/comK1) [Staphylococcus aureus strain FDAARGOS_27]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAAAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995

Multiple sequence alignment