Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RK82_RS07965 Genome accession   NZ_CP026068
Coordinates   1540460..1540855 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1535460..1545855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK82_RS07940 (RK82_007940) thiE 1536060..1536701 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  RK82_RS07945 (RK82_007945) thiM 1536703..1537494 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  RK82_RS07950 (RK82_007950) thiD 1537478..1538308 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RK82_RS07955 (RK82_007955) tenA 1538301..1538990 (-) 690 WP_000396076.1 thiaminase II -
  RK82_RS07960 (RK82_007960) sceD 1539376..1540071 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  RK82_RS07965 (RK82_007965) ssb 1540460..1540855 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  RK82_RS07970 (RK82_007970) - 1541049..1541489 (+) 441 WP_000846746.1 YwpF-like family protein -
  RK82_RS07975 (RK82_007975) fabZ 1541548..1541988 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RK82_RS07980 (RK82_007980) murA 1542022..1543287 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RK82_RS07985 (RK82_007985) - 1543398..1543631 (-) 234 WP_000384523.1 DUF1146 family protein -
  RK82_RS07990 (RK82_007990) - 1543763..1543855 (-) 93 WP_001790611.1 hypothetical protein -
  RK82_RS07995 (RK82_007995) - 1544193..1544597 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=266447 RK82_RS07965 WP_000932694.1 1540460..1540855(-) (ssb) [Staphylococcus aureus strain FDAARGOS_24]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=266447 RK82_RS07965 WP_000932694.1 1540460..1540855(-) (ssb) [Staphylococcus aureus strain FDAARGOS_24]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment