Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AXA56_RS00260 | Genome accession | NZ_CP031609 |
| Coordinates | 53849..54289 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360904.1 | Uniprot ID | P36647 |
| Organism | Escherichia coli strain N3 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 48849..59289
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXA56_RS00235 (AXA56_00235) | aroP | 49847..51220 (+) | 1374 | WP_000969915.1 | aromatic amino acid transporter AroP | - |
| AXA56_RS00240 (AXA56_00240) | ampE | 51263..52117 (-) | 855 | WP_000172005.1 | beta-lactamase regulator AmpE | - |
| AXA56_RS00245 (AXA56_00245) | ampD | 52114..52665 (-) | 552 | WP_000923726.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AXA56_RS00250 (AXA56_00250) | nadC | 52753..53646 (+) | 894 | WP_001135168.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AXA56_RS00260 (AXA56_00260) | pilA | 53849..54289 (+) | 441 | WP_000360904.1 | prepilin peptidase-dependent pilin | Machinery gene |
| AXA56_RS00265 (AXA56_00265) | pilB | 54299..55684 (+) | 1386 | WP_096983547.1 | type II secretion system protein GspE | Machinery gene |
| AXA56_RS00270 (AXA56_00270) | hofC | 55674..56876 (+) | 1203 | WP_116836068.1 | protein transport protein HofC | - |
| AXA56_RS00275 (AXA56_00275) | guaC | 56911..57954 (-) | 1044 | WP_001217337.1 | GMP reductase | - |
| AXA56_RS25150 | - | 58110..58154 (-) | 45 | WP_120795372.1 | protein YacM | - |
| AXA56_RS00280 (AXA56_00280) | coaE | 58179..58799 (+) | 621 | WP_001269517.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15621.75 Da Isoelectric Point: 4.3938
>NTDB_id=266417 AXA56_RS00260 WP_000360904.1 53849..54289(+) (pilA) [Escherichia coli strain N3]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=266417 AXA56_RS00260 WP_000360904.1 53849..54289(+) (pilA) [Escherichia coli strain N3]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGTAATGGCATCCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACGCCGGGTTGGGATAACGCAAACGGCGTCACCGGTTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTTCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGTAATGGCATCCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACGCCGGGTTGGGATAACGCAAACGGCGTCACCGGTTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTTCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |