Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RK77_RS13490 Genome accession   NZ_CP026064
Coordinates   2622375..2623061 (+) Length   228 a.a.
NCBI ID   WP_075583650.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_19     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2617375..2628061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK77_RS13455 (RK77_013455) yqeH 2617902..2619002 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  RK77_RS13460 (RK77_013460) aroE 2619016..2619822 (+) 807 WP_000666749.1 shikimate dehydrogenase -
  RK77_RS13465 (RK77_013465) yhbY 2619826..2620116 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  RK77_RS13470 (RK77_013470) nadD 2620119..2620688 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  RK77_RS13475 (RK77_013475) yqeK 2620678..2621262 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  RK77_RS13480 (RK77_013480) rsfS 2621263..2621616 (+) 354 WP_001088022.1 ribosome silencing factor -
  RK77_RS13485 (RK77_013485) - 2621619..2622335 (+) 717 WP_000084824.1 class I SAM-dependent methyltransferase -
  RK77_RS13490 (RK77_013490) comEA 2622375..2623061 (+) 687 WP_075583650.1 ComEA family DNA-binding protein Machinery gene
  RK77_RS13495 (RK77_013495) - 2623153..2623614 (+) 462 WP_000439693.1 ComE operon protein 2 -
  RK77_RS13500 (RK77_013500) comEC 2623619..2625820 (+) 2202 WP_001670363.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RK77_RS13505 (RK77_013505) holA 2625877..2626851 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  RK77_RS13510 (RK77_013510) rpsT 2626896..2627147 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25787.53 Da        Isoelectric Point: 9.6753

>NTDB_id=266321 RK77_RS13490 WP_075583650.1 2622375..2623061(+) (comEA) [Staphylococcus aureus strain FDAARGOS_19]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=266321 RK77_RS13490 WP_075583650.1 2622375..2623061(+) (comEA) [Staphylococcus aureus strain FDAARGOS_19]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.123

100

0.991
  comEA Staphylococcus aureus N315

98.246

100

0.982

Multiple sequence alignment