Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DXG80_RS03970 Genome accession   NZ_CP031500
Coordinates   778185..778838 (+) Length   217 a.a.
NCBI ID   WP_034350151.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain R1 dM1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 773185..783838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXG80_RS03955 (DXG80_03950) bshA 774203..775387 (+) 1185 WP_051618804.1 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA -
  DXG80_RS03960 (DXG80_03955) - 775427..777136 (+) 1710 WP_010888195.1 sensor histidine kinase -
  DXG80_RS03965 (DXG80_03960) - 777133..778164 (+) 1032 WP_010888196.1 DUF4097 family beta strand repeat-containing protein -
  DXG80_RS03970 (DXG80_03965) vraR 778185..778838 (+) 654 WP_034350151.1 response regulator Regulator
  DXG80_RS03975 (DXG80_03970) - 778835..779563 (+) 729 WP_027479858.1 hypothetical protein -
  DXG80_RS03980 (DXG80_03975) - 779597..780517 (-) 921 WP_027479859.1 diacylglycerol/lipid kinase family protein -
  DXG80_RS03985 (DXG80_03980) wecB 780726..781871 (-) 1146 WP_034350154.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  DXG80_RS03990 (DXG80_03985) - 781889..783019 (-) 1131 WP_010888201.1 MraY family glycosyltransferase -
  DXG80_RS03995 (DXG80_03990) upp 783115..783738 (-) 624 WP_027479860.1 uracil phosphoribosyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23608.02 Da        Isoelectric Point: 4.9055

>NTDB_id=265998 DXG80_RS03970 WP_034350151.1 778185..778838(+) (vraR) [Deinococcus radiodurans strain R1 dM1]
MTTPTVRVLLVDDHAVVRQGLRLFLGLDEGIEVVGEAANGEEALQEAERLRPEVVVMDLMMPVMDGITATRELRRRLPDT
EVIALTSTLEENKVNGAIEAGAISYMLKDASSDTLADAIHAAARGEVRLHPEAARRLVRDFRSPEMRESLTPKETAVLQL
LARGQSNKDIAAEQGVSEATVKTHVSRLLSKLGLDSRTQAALYALKYGIASLEGVEL

Nucleotide


Download         Length: 654 bp        

>NTDB_id=265998 DXG80_RS03970 WP_034350151.1 778185..778838(+) (vraR) [Deinococcus radiodurans strain R1 dM1]
ATGACCACCCCCACTGTCCGTGTGCTGCTCGTTGACGACCACGCCGTCGTGCGCCAGGGTCTGCGCCTCTTTCTGGGGCT
GGACGAAGGCATCGAAGTGGTGGGCGAGGCCGCCAACGGCGAAGAAGCCCTGCAAGAGGCCGAGCGCCTGCGCCCCGAAG
TCGTCGTGATGGACCTGATGATGCCGGTGATGGATGGCATTACCGCCACCCGTGAGCTGCGCCGCCGCCTGCCCGACACC
GAAGTCATCGCGCTGACCTCCACCCTGGAAGAAAACAAGGTGAACGGCGCGATTGAGGCCGGGGCCATCTCGTACATGCT
CAAGGACGCCTCCAGCGACACCCTGGCCGACGCCATCCACGCGGCGGCGCGCGGCGAAGTGCGGCTGCATCCCGAAGCGG
CGCGGCGGCTGGTGCGCGATTTCCGGTCGCCGGAGATGCGCGAGAGCCTGACCCCCAAGGAAACCGCCGTGCTGCAACTG
CTGGCGCGCGGGCAGAGCAACAAGGACATCGCCGCCGAACAGGGCGTGAGCGAGGCGACGGTCAAGACCCACGTGTCGCG
GCTGCTGAGCAAGCTGGGGCTGGACAGCCGGACGCAGGCGGCGCTCTACGCCCTCAAATACGGGATTGCCAGTCTGGAGG
GCGTGGAGTTGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.718

94.931

0.406
  degU Bacillus subtilis subsp. subtilis str. 168

37.333

100

0.387