Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   RK51_RS05890 Genome accession   NZ_CP026041
Coordinates   1131893..1132507 (-) Length   204 a.a.
NCBI ID   WP_005493991.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FDAARGOS_51     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126893..1137507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK51_RS05880 (RK51_005880) aceF 1128169..1130070 (+) 1902 WP_005493990.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  RK51_RS05885 (RK51_005885) lpdA 1130339..1131766 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  RK51_RS05890 (RK51_005890) opaR 1131893..1132507 (-) 615 WP_005493991.1 transcriptional regulator OpaR Regulator
  RK51_RS05895 (RK51_005895) hpt 1132826..1133356 (+) 531 WP_005462585.1 hypoxanthine phosphoribosyltransferase -
  RK51_RS05900 (RK51_005900) can 1133429..1134097 (-) 669 WP_005462578.1 carbonate dehydratase -
  RK51_RS05905 (RK51_005905) - 1134381..1136051 (+) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  RK51_RS05915 (RK51_005915) - 1136304..1137221 (+) 918 WP_005493995.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23565.83 Da        Isoelectric Point: 5.8297

>NTDB_id=265978 RK51_RS05890 WP_005493991.1 1131893..1132507(-) (opaR) [Vibrio parahaemolyticus strain FDAARGOS_51]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGSGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=265978 RK51_RS05890 WP_005493991.1 1131893..1132507(-) (opaR) [Vibrio parahaemolyticus strain FDAARGOS_51]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCAGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

99.51

100

0.995
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696

Multiple sequence alignment