Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   DXX82_RS03730 Genome accession   NZ_CP031477
Coordinates   775075..775587 (-) Length   170 a.a.
NCBI ID   WP_115911566.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 770075..780587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS03705 nfuA 771360..771944 (-) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  DXX82_RS03710 - 772060..772749 (-) 690 WP_005697373.1 ComF family protein -
  DXX82_RS03715 comE 772769..774151 (-) 1383 WP_115911560.1 type IV pilus secretin PilQ Machinery gene
  DXX82_RS03720 - 774153..774536 (-) 384 WP_115911562.1 pilus assembly protein PilP -
  DXX82_RS03725 comC 774536..775078 (-) 543 WP_115911564.1 competence protein ComC Machinery gene
  DXX82_RS03730 comB 775075..775587 (-) 513 WP_115911566.1 competence protein ComB Machinery gene
  DXX82_RS03735 comA 775574..776422 (-) 849 WP_115911568.1 pilus assembly protein PilM Machinery gene
  DXX82_RS03740 - 776522..779134 (+) 2613 WP_111304846.1 penicillin-binding protein 1A -
  DXX82_RS03745 - 779259..780563 (-) 1305 WP_205411139.1 MFS transporter -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 20292.43 Da        Isoelectric Point: 6.4922

>NTDB_id=265946 DXX82_RS03730 WP_115911566.1 775075..775587(-) (comB) [Haemophilus parainfluenzae strain M27794]
MLSLNLLPWRLEQHQKAVRRFMWQGFIWLACSVLIFVGLSHLNEQQVYALNQTKEKLAQITNQVHKKRIQVQQLQSNLKE
MNELTEMDTEYVYRMLNLLSELPLKQGELDEFTLNAKQVVLSGMTESQQEFEEIHQFLKRHFIEVNLTKFQPVQQQLFFQ
FDIHLSESVQ

Nucleotide


Download         Length: 513 bp        

>NTDB_id=265946 DXX82_RS03730 WP_115911566.1 775075..775587(-) (comB) [Haemophilus parainfluenzae strain M27794]
ATGTTAAGCCTTAATTTATTGCCTTGGCGCTTAGAACAACATCAAAAGGCCGTTCGGCGCTTTATGTGGCAAGGTTTCAT
TTGGCTAGCTTGCTCAGTTTTGATTTTTGTTGGCTTGAGTCATCTTAATGAACAACAAGTGTATGCGCTAAATCAGACAA
AAGAAAAACTCGCACAAATCACCAATCAAGTCCATAAGAAACGCATTCAAGTTCAGCAACTACAAAGTAACCTGAAAGAA
ATGAATGAGCTGACAGAAATGGATACAGAATATGTGTATCGGATGCTTAACTTATTAAGTGAGCTGCCATTAAAACAGGG
CGAGTTAGATGAATTTACGCTCAATGCGAAGCAAGTTGTCCTTTCAGGCATGACAGAAAGCCAACAAGAGTTTGAGGAGA
TACATCAATTTCTCAAACGCCATTTTATAGAGGTTAACTTAACTAAGTTTCAGCCAGTGCAACAGCAGTTATTTTTTCAA
TTTGATATTCATTTATCGGAGTCTGTGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

41.975

95.294

0.4
  comB Haemophilus influenzae Rd KW20

41.358

95.294

0.394