Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OEOE_RS00050 | Genome accession | NC_008528 |
| Coordinates | 12145..12702 (+) | Length | 185 a.a. |
| NCBI ID | WP_002817940.1 | Uniprot ID | - |
| Organism | Oenococcus oeni PSU-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 7145..17702
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OEOE_RS09460 (OEOE_0007) | - | 8835..9002 (+) | 168 | WP_002817936.1 | hypothetical protein | - |
| OEOE_RS00035 (OEOE_0008) | nadE | 9053..9880 (-) | 828 | WP_011677328.1 | ammonia-dependent NAD(+) synthetase | - |
| OEOE_RS00040 (OEOE_0009) | - | 10111..11577 (+) | 1467 | WP_011677329.1 | multicopper oxidase domain-containing protein | - |
| OEOE_RS00045 (OEOE_0010) | rpsF | 11696..12136 (+) | 441 | WP_002817809.1 | 30S ribosomal protein S6 | - |
| OEOE_RS00050 (OEOE_0011) | ssb | 12145..12702 (+) | 558 | WP_002817940.1 | single-stranded DNA-binding protein | Machinery gene |
| OEOE_RS00055 (OEOE_0012) | rpsR | 12725..13045 (+) | 321 | WP_002817941.1 | 30S ribosomal protein S18 | - |
| OEOE_RS00060 (OEOE_0013) | - | 13148..15205 (+) | 2058 | WP_002817942.1 | DHH family phosphoesterase | - |
| OEOE_RS00065 (OEOE_0014) | rplI | 15219..15674 (+) | 456 | WP_002817489.1 | 50S ribosomal protein L9 | - |
| OEOE_RS00070 (OEOE_0015) | dnaB | 15680..17137 (+) | 1458 | WP_002817943.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 185 a.a. Molecular weight: 20219.82 Da Isoelectric Point: 4.5093
>NTDB_id=26592 OEOE_RS00050 WP_002817940.1 12145..12702(+) (ssb) [Oenococcus oeni PSU-1]
MINRVVLVGRLTRDVELRYTGNGDAVGSFTIAVERNFTNRAGEREADFISCVIWRKPAENFANFTGKGAMVGVEGRIQTR
TYDNNQGQKVYVTEVVVDNFQLLETRAQSEARRSQNGSAGNTGNTAPQSQSNFNIPNQQSNPFDSQFNNNASSASTNSQT
SSSSSPFNTDTGNDSLDISDDDLPF
MINRVVLVGRLTRDVELRYTGNGDAVGSFTIAVERNFTNRAGEREADFISCVIWRKPAENFANFTGKGAMVGVEGRIQTR
TYDNNQGQKVYVTEVVVDNFQLLETRAQSEARRSQNGSAGNTGNTAPQSQSNFNIPNQQSNPFDSQFNNNASSASTNSQT
SSSSSPFNTDTGNDSLDISDDDLPF
Nucleotide
Download Length: 558 bp
>NTDB_id=26592 OEOE_RS00050 WP_002817940.1 12145..12702(+) (ssb) [Oenococcus oeni PSU-1]
ATGATCAATCGAGTTGTATTAGTTGGTAGATTAACCCGCGACGTTGAGTTGCGTTATACAGGAAATGGTGATGCAGTTGG
ATCATTTACAATCGCTGTCGAACGAAATTTCACGAATCGCGCTGGTGAGCGCGAGGCTGATTTTATCAGTTGCGTGATTT
GGCGTAAACCTGCCGAAAACTTTGCCAATTTTACAGGTAAAGGAGCAATGGTTGGCGTCGAAGGCCGAATTCAGACCAGA
ACTTACGATAATAATCAGGGACAGAAGGTTTATGTGACCGAGGTTGTTGTTGATAATTTCCAATTATTGGAGACACGTGC
TCAATCTGAAGCGCGTCGTTCGCAAAATGGCAGTGCTGGTAACACGGGGAATACCGCTCCGCAAAGTCAGAGTAATTTCA
ATATTCCTAATCAACAGTCAAATCCATTTGATTCGCAATTCAACAATAATGCGAGTTCCGCTTCAACTAATAGTCAAACG
AGTTCTTCCAGCAGTCCTTTTAATACAGACACCGGGAATGATTCGCTTGATATCTCGGATGATGATCTTCCGTTTTAA
ATGATCAATCGAGTTGTATTAGTTGGTAGATTAACCCGCGACGTTGAGTTGCGTTATACAGGAAATGGTGATGCAGTTGG
ATCATTTACAATCGCTGTCGAACGAAATTTCACGAATCGCGCTGGTGAGCGCGAGGCTGATTTTATCAGTTGCGTGATTT
GGCGTAAACCTGCCGAAAACTTTGCCAATTTTACAGGTAAAGGAGCAATGGTTGGCGTCGAAGGCCGAATTCAGACCAGA
ACTTACGATAATAATCAGGGACAGAAGGTTTATGTGACCGAGGTTGTTGTTGATAATTTCCAATTATTGGAGACACGTGC
TCAATCTGAAGCGCGTCGTTCGCAAAATGGCAGTGCTGGTAACACGGGGAATACCGCTCCGCAAAGTCAGAGTAATTTCA
ATATTCCTAATCAACAGTCAAATCCATTTGATTCGCAATTCAACAATAATGCGAGTTCCGCTTCAACTAATAGTCAAACG
AGTTCTTCCAGCAGTCCTTTTAATACAGACACCGGGAATGATTCGCTTGATATCTCGGATGATGATCTTCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.452 |
100 |
0.568 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.568 |
100 |
0.476 |