Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LACR_RS11865 Genome accession   NC_008527
Coordinates   2283148..2283498 (-) Length   116 a.a.
NCBI ID   WP_011677204.1    Uniprot ID   Q02VY1
Organism   Lactococcus cremoris subsp. cremoris SK11     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2278148..2288498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACR_RS11865 (LACR_2452) comX 2283148..2283498 (-) 351 WP_011677204.1 sigma-70 family RNA polymerase sigma factor Regulator
  LACR_RS11870 (LACR_2453) ezrA 2283762..2285492 (-) 1731 WP_011677205.1 septation ring formation regulator EzrA -
  LACR_RS11875 (LACR_2454) tsf 2285697..2286725 (-) 1029 WP_011677206.1 translation elongation factor Ts -
  LACR_RS11880 (LACR_2455) rpsB 2286847..2287614 (-) 768 WP_011677207.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 13858.95 Da        Isoelectric Point: 6.8387

>NTDB_id=26586 LACR_RS11865 WP_011677204.1 2283148..2283498(-) (comX) [Lactococcus cremoris subsp. cremoris SK11]
MTYYLEENEFEGLFSGMKPIIRKLMKQIRIKAWDIEDYYQEGMIILHHLLEENHPSTNIYTKFKVKYHQRLIDELRHSYA
KKRLHDHFVGLDIYECSDWIDAGGSTLKASLCSTIF

Nucleotide


Download         Length: 351 bp        

>NTDB_id=26586 LACR_RS11865 WP_011677204.1 2283148..2283498(-) (comX) [Lactococcus cremoris subsp. cremoris SK11]
ATGACATATTACTTGGAAGAAAATGAATTCGAAGGTTTATTTTCTGGAATGAAACCAATCATCAGAAAATTGATGAAACA
AATTCGAATCAAAGCATGGGACATAGAGGATTATTATCAAGAAGGAATGATTATTTTGCATCACCTTTTAGAAGAAAATC
ACCCATCCACTAATATTTATACAAAGTTCAAAGTAAAATATCATCAACGTTTGATTGATGAACTACGCCATAGCTACGCC
AAAAAACGGCTTCATGACCATTTTGTAGGTCTAGACATTTATGAATGTTCGGACTGGATAGATGCAGGAGGAAGTACCCT
GAAAGCGAGCTTGTGTTCAACCATCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02VY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

95.536

96.552

0.922
  comX Lactococcus lactis subsp. lactis strain DGCC12653

72.642

91.379

0.664

Multiple sequence alignment